Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01404 ATGCAAAGGCTAATCACTGGTCTTTTAGTTCTTGCTTTTGTTTCACCATATTTGTGTATTAGTTCATTTGTTGGAACCACAAACACAGTTTATAATGTAATAGACTTTGGTGCTATTGGCAGTGGCACTGTTGATGATTCGCAGGCGTTTTTAAAGGCATGGCAGCAAACGTGTGGAACACAAGGGGACAATACTCTACTCATACCAGCAGGAAAAGTGTTCCTGGTGAATAGCATCACAATGAGTGGTAATTGCACAGCTACGAGTATTTCTATTCAGCTTCAAGGGGAAATAGTTGCACCGACTAAGAATGCATGGGTTGGAAATAGCCTCAATTTAATTATGTTCAACAAGGTAAACGGTCTCACAATTGATGGAAGTGGAGGATTAATTGATGGAACGGGTTCTACTTGGTGGGGATGCAATTGTCCACGACCAGCGGTCCTTACTTTCCAATCATGCAATAATCTTAGCGTTAAAAGTTTGACAATCATAAATAGTCCAAAAGCTCACATTCATATAAATAGCTGTATGGGTGCCATATTCTCTTATATCAATATTAGTTCACCTGGTAACACTCCCAACACTGATGGAATTGATATTTATTATTCACAAAATATCCGGATAGAAGATTCCACTATAGCATCTGGTGATGATTGTATTGCCATCACTGGTGACTCCTCTTACATCAATGCTACACGAATTGCTTGTGGACCAGGTCATGGAATAAGCATTGGCAGCCTAGGTAGAGACGATGCTTATAATACAGTCGAAGAAGTTTACGTACAAAATTGTAGCTTCACGAACACTAAAAATGCAGCAAGAATCAAGACATGGCCGAATGGATCAGGTTTTGCAAAGAAAATTACTTTTGAGCAAATCACATTGAGCCAGAGTGGGAATCCTATACTTATAGACCAATACTACAATCAATATTTAGTGCAAGAAGGAGTGCAACTGAGCGAGGTGACATTCAGTGGGTTTCAAGGAACATCGGCAACTGACCATGCTATTACCTTAAATTGTTCCTCATCAGGTTGTTTCAACATTGTATTGGATCAGATTAACATTGTCTCTTCTAAACCAGGAAAGCCGGCTTACTGTTCTTGCATTAATGCTCATGGAACAGCTACAGATACAGTTCCAGATTGTTCTTGTTTATCGACATGA 1170 0.394 MQRLITGLLVLAFVSPYLCISSFVGTTNTVYNVIDFGAIGSGTVDDSQAFLKAWQQTCGTQGDNTLLIPAGKVFLVNSITMSGNCTATSISIQLQGEIVAPTKNAWVGNSLNLIMFNKVNGLTIDGSGGLIDGTGSTWWGCNCPRPAVLTFQSCNNLSVKSLTIINSPKAHIHINSCMGAIFSYINISSPGNTPNTDGIDIYYSQNIRIEDSTIASGDDCIAITGDSSYINATRIACGPGHGISIGSLGRDDAYNTVEEVYVQNCSFTNTKNAARIKTWPNGSGFAKKITFEQITLSQSGNPILIDQYYNQYLVQEGVQLSEVTFSGFQGTSATDHAITLNCSSSGCFNIVLDQINIVSSKPGKPAYCSCINAHGTATDTVPDCSCLST 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01404 389 PANTHER - 1 387 - -
Cca01g01404 389 Gene3D - 21 386 IPR012334 -
Cca01g01404 389 Pfam Glycosyl hydrolases family 28 58 374 IPR000743 GO:0004650|GO:0005975
Cca01g01404 389 SUPERFAMILY Pectin lyase-like 18 387 IPR011050 -
Cca01g01404 389 ProSitePatterns Polygalacturonase active site. 234 247 IPR000743 GO:0004650|GO:0005975
Cca01g01404 389 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 1 387 - -
Cca01g01404 389 SMART pbh1 177 203 IPR006626 -
Cca01g01404 389 SMART pbh1 286 307 IPR006626 -
Cca01g01404 389 SMART pbh1 315 342 IPR006626 -
Cca01g01404 389 SMART pbh1 204 225 IPR006626 -
Cca01g01404 389 SMART pbh1 257 278 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01404 Cca-Chr1 28405424 28408672 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01404 27 384 Glycoside Hydrolase AT5G17200 42.597 1.11e-104 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01404 K01184 - gmx:100820332 510.375