Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01403 ATGCAAAGGCTAAACACTTGTCTTTATTTGATTCTTGGTTTTGTTGCACCATGTTTCTGTGATACATCATTTGTTGGAACCAATAACACATTTTTTAATGTAATAGACTATGGTGCTAAGGGTGATGGCAAATCTGATGATACCCAGGCATTTGTTACTGCATGGCAGCATGCGTGTGGAACACAAGGGGCATCAACTCTAGTTATACCACCAAAAACAGTGTTTCTGGTGAGGAACCTACGCCTAGAGGGTCCTTGTAATGCTACAAGTATTCTTATTCAGCTTCAAGGGGAAATAGTTGCACCTGCCAAAAATGAATGGATAAATGGTCTCACAATTGATGAAGAGTCTAATTTGATTTTGATCTCAAAAGTAAATAGTCTCACGGTTGATGGAAACGGAGGGCTAATAGATGGCTATGGTTCTACTTGGTGGGCATGCAAACGTTGTACACGACCAATGATCCTTAAATTCCTATCATGCAATGATCTTAGTGTTAGTAACCTGATGATCATAAATAGTCCAAAAGCTCACATACATGTAAATTTTTGTGATGGTGCCATATTATCTAATATCAATATTAGTGCACCTGGTGATAGTCCCAACACCGATGGAATTGATATTTCTTCCTCAAAAAATATCATAGTAGAAGATTCCACTTTCGAAACTGGTGATGATTGTATTGCCATCACTGGTAACTCCTCTTACATCAATGCCACAAGAATTGCTTGTGGACCAGGTCATGGAATAAGCATTGGAAGCCTGGGTAGAAACAATGCTAATGATAGAGTGGAAGAAGTTCATGTACGAAATTGTACCTTCACAAACACCAAAAATGGAGCAAGAATCAAGACATGGATCGGTGGATCAGGTTATGCAAGAAAAATCTACTTTGAGCAAATCATATTATCACAGGCTAAAAACCCAATAATTATAAATCAGTACTATAGTGATTATGTAACGAATGGAGGGTTGGAAGTGAGCGACGTGACATACCGTGGATTCCAAGGAACATCTCTGAATGACAAAGCTATTACCTTAAATTGTTCCTCATCAGGTTGTTTCAACATTGTATTGGATCAGATTAACATTGTCTCTTCTGAACCAGGAGCGACGGCTTATTGCACTATCTATAATGCTCGTGGAACAGCTACATCTACGGTTCCAAATTGTTCTCTGTCGACATGA 1188 0.3872 MQRLNTCLYLILGFVAPCFCDTSFVGTNNTFFNVIDYGAKGDGKSDDTQAFVTAWQHACGTQGASTLVIPPKTVFLVRNLRLEGPCNATSILIQLQGEIVAPAKNEWINGLTIDEESNLILISKVNSLTVDGNGGLIDGYGSTWWACKRCTRPMILKFLSCNDLSVSNLMIINSPKAHIHVNFCDGAILSNINISAPGDSPNTDGIDISSSKNIIVEDSTFETGDDCIAITGNSSYINATRIACGPGHGISIGSLGRNNANDRVEEVHVRNCTFTNTKNGARIKTWIGGSGYARKIYFEQIILSQAKNPIIINQYYSDYVTNGGLEVSDVTYRGFQGTSLNDKAITLNCSSSGCFNIVLDQINIVSSEPGATAYCTIYNARGTATSTVPNCSLST 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01403 395 Pfam Glycosyl hydrolases family 28 59 377 IPR000743 GO:0004650|GO:0005975
Cca01g01403 395 SMART pbh1 211 232 IPR006626 -
Cca01g01403 395 SMART pbh1 264 285 IPR006626 -
Cca01g01403 395 SMART pbh1 184 210 IPR006626 -
Cca01g01403 395 ProSitePatterns Polygalacturonase active site. 241 254 IPR000743 GO:0004650|GO:0005975
Cca01g01403 395 SUPERFAMILY Pectin lyase-like 28 389 IPR011050 -
Cca01g01403 395 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 1 390 - -
Cca01g01403 395 PANTHER - 1 390 - -
Cca01g01403 395 Gene3D - 23 394 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01403 Cca-Chr1 28384786 28388401 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01403 7 391 Glycoside Hydrolase AT5G17200 40.909 5.82e-96 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01403 K01184 - gmx:100820332 501.13