Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01401 ATGGCTTTGCAGTTTCTGAAGCACCCCGTAACCGACCCAACCTTAACTTTTCTTTCTCGGTTACGAAATCCCAAACTTCCATTCACAGTGAGATGGGATGATGCTCGGATTCCAACTTACTTTAGGAGCTATGCTACTGGAAAATCAGAAAAGGTTCTACATGTGAAGAAGAAAAAACGGCTGGATGAAATATGTCTTGAAAAATATCAGCAATATAGTAGATCTGTCATCCAGTCTTGGATTTTGCAAGGCAAAGTATATGTCAACGGGAAGGTGATAAATAAAGCTGGTACCCCCGTGCCTGATAAAGCTGTTGTGGAGATAGTGGCTGATGTTCCCAAATATGTATGTAGAGCTGGACATAAGTTGGAAGCTGCCATTGAACAGCTTGGTGTTGATGTAACCGGTAAAGTAGCTCTTGATTCTGGGCTATCAACTGGGGGATTTACTGACTGCTTACTTCAGTATGGTGCATCACATGTTTATGGAGTTGACGTAGGTTATGGGCAGGTAGCTGACAAAATTCGAAGAGATGAACGTGTATCGGTGATAGAACGCACAAATTTAAGATATCTTGCTGGACTCCCACAAAATGTTGATTTGGTGACTTTAGACCTCTCATTCATCTCTATTCTCTTGGTCATGCCTGCTGTGGTCAATGCCATGAAAGAAAATGCAGCATTAGTGACTTTGGTTAAACCACAATTTGAAGCTCGTAGATCTCAAGTAGGAAAAGGAGGGATAGTGAAAGATCCCATTGTTCATCAAGAGGTCCTTGAGAAGATTATAAAGGGAGTAGAGAGTTTTGGTTTCTGCTGTAAAGGTTGGATAGAGTCTCCTCTGAAAGGTGCTGAGGGTAATACAGAATTCCTTGTTCACTTCAACAGAACCCATGATAAGGTTCCCGAAGATCTGGAGTGA 921 0.4191 MALQFLKHPVTDPTLTFLSRLRNPKLPFTVRWDDARIPTYFRSYATGKSEKVLHVKKKKRLDEICLEKYQQYSRSVIQSWILQGKVYVNGKVINKAGTPVPDKAVVEIVADVPKYVCRAGHKLEAAIEQLGVDVTGKVALDSGLSTGGFTDCLLQYGASHVYGVDVGYGQVADKIRRDERVSVIERTNLRYLAGLPQNVDLVTLDLSFISILLVMPAVVNAMKENAALVTLVKPQFEARRSQVGKGGIVKDPIVHQEVLEKIIKGVESFGFCCKGWIESPLKGAEGNTEFLVHFNRTHDKVPEDLE 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01401 306 TIGRFAM tly: TlyA family rRNA methyltransferase/putative hemolysin 60 289 IPR004538 GO:0003723
Cca01g01401 306 CDD S4 59 108 - -
Cca01g01401 306 ProSiteProfiles S4 RNA-binding domain profile. 59 119 - -
Cca01g01401 306 Gene3D Vaccinia Virus protein VP39 110 306 IPR029063 -
Cca01g01401 306 SUPERFAMILY Alpha-L RNA-binding motif 55 111 - -
Cca01g01401 306 PIRSF TlyA 54 306 IPR004538 GO:0003723
Cca01g01401 306 PANTHER BACTERIAL HEMOLYSIN-LIKE PROTEIN 56 299 - -
Cca01g01401 306 Pfam S4 domain 60 104 IPR002942 GO:0003723
Cca01g01401 306 Gene3D - 49 109 IPR036986 GO:0003723
Cca01g01401 306 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 115 295 IPR029063 -
Cca01g01401 306 SMART s4_6 59 124 IPR002942 GO:0003723
Cca01g01401 306 PANTHER BACTERIAL HEMOLYSIN-LIKE PROTEIN 56 299 IPR004538 GO:0003723
Cca01g01401 306 Pfam FtsJ-like methyltransferase 115 295 IPR002877 GO:0008168|GO:0032259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01401 K06442 - gmx:100781303 542.347