Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01400 ATGGATTTACAAGTTGCTGTTGAGGACATAATCCCATGGGATGGGACTCTCTCTGTAAGTGACTTTTCCCTTTCTGCTCGTACATTTTCCGAGAAGTGGAAAAGGTTCAATCCTTCCTTTCCTCCATGGCTTTGGATCCCATGTCCCAAACACCATTTGGCTTCTTCACATAAGGAGGAAGGATACTTGTCACTGGAGAACATGTGCCATATCCAATCAAGTGAGAAGGAAGAGATTAATAGTAGCTTGACATGGAAAGAAGAGAGCAACATCTCACACAGAGAAGAGCCCTTTGATTATGCAACTTTAGTATGCCCAGAGCATGAAGTAAACCACTATGATTTTCACATTGTCTACAGTCCTTCATATAGAGTTCCAGTCTTATATTTCCGTTCATACCATAGTGATGGGCAACTTTTGCCGTTTAATGAAATTGAAAAGGACCTTCCTGGTCACTCTGCGAAATTACGATCAGAATCCAAATGGACATTTATAACTCACGACGAACATCCATATTTGAACAGGCCGTGGTACAAATTACATCCATGTGGGACGAGTGACTGGATGAAGCTCCTCTTCTATGGTGATTCATCTTTGAACAAAACTGGTTCTGTTATTGAACAATATTTGGTTTCCTGGTTCTCTGTCATTGGACAAGTGGTTGGTCTGAAACTTCCTTTGGAAATGCTGGACACTGTAGCTTCTAATGATTCTTAG 717 0.4114 MDLQVAVEDIIPWDGTLSVSDFSLSARTFSEKWKRFNPSFPPWLWIPCPKHHLASSHKEEGYLSLENMCHIQSSEKEEINSSLTWKEESNISHREEPFDYATLVCPEHEVNHYDFHIVYSPSYRVPVLYFRSYHSDGQLLPFNEIEKDLPGHSAKLRSESKWTFITHDEHPYLNRPWYKLHPCGTSDWMKLLFYGDSSLNKTGSVIEQYLVSWFSVIGQVVGLKLPLEMLDTVASNDS 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01400 238 Gene3D - 56 223 - -
Cca01g01400 238 Pfam Autophagocytosis associated protein, active-site domain 29 226 IPR007135 GO:0019787
Cca01g01400 238 PANTHER UBIQUITIN-LIKE-CONJUGATING ENZYME ATG3 11 229 IPR007135 GO:0019787
Cca01g01400 238 PANTHER AUTOPHAGY-RELATED 10, ISOFORM B 11 229 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01400 K17888 - gmx:100786914 435.261