Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01378 ATGAAGCGAAAGGCTACCTCGGAAGCTCCGAACGAGGTTGTTGCTGCCTCCGACGCTGCGGATTTGGGTGGCGGAGATGTTGGGGGTGTTCAAGTTGAGAGCTTTGTGGGAGATGAGGGTACTCAGTTGCGGAAAAGTGGGGGTGAGGAACCCCTTGTGGAGGATTCTgaagatgaagaagaagaggatgaggatgaggatgaggaagagAATGAAGGGGGAAAGGATGGTGCTGTTCCTCATGTGGCTGAAGGAGCACACCAACCTGTTGTTCTGGCTGAGAATTTCTATGAAGTTGAAGCTATTCGTCGCAAGAGGGTGCGCAAGGGTCAGCTGCAATACTTTATCAAATGGCGTGATTGGCCCGAGACAGCCAACACATGGGAGCCTCCAGAAAATCTAGAGTCTGTTCCTGATGTTATTGAAGCTTTTGAAGAGAGCTTGAAGTCAGGAAAACCTCGTAAGCGCAGACGGAAGCACGTGGTGCATCATCATACTCAACCCAAGAAGCGGCTGGAGCGTTCTAGCACTCCTTACAGCCTTCGACGTTTTTCAACTAAAACAGCTGAGAAGCATACACAGTCTGCTCCTCTTAATGATCCTATCCTTAATGATGTACCTGCCTTTCCTCAGACTGTGCTTTTTGCTGATGAAGTGGGAAATGGTGGTGATGGCAACAGTCTTGGAAAGGCCACAGATGGTAACGCTAACAAGGCTGCAAATGGTTCCCAACAAAATATTGAAAGGAATGAGGAAAATGATTATGATCCTAAGCTTAGTGAGCTTAAAGCTACGAGTGCCAATGGGAATGATATAGACAAGCTTGCAATTCAGTTTCAAGAAGATAAGCTTTCTTCAGGCAATAATTGTCAAATGGATGGTACATCAAAGGGGGATTTCTCAGACACAGTTCGAGGAGCCAAACGGAGAAAATCTGGTTCTGTAAAGAGATTCAAGAAAGAAGCACATGCTGGTGGGCTTGCTAATACTCAAAATCCAATTGGCACGCCTGTTGGTACAGTTGAGCAAGCACGAACAAGGAATCCTAATAGTGGTGGTAATACTGATCATGCCAGTCCTGCTAGCAATATTGTAAGGATTATAAAGCCAATAGGCTATTCAGCTTCAGCAGCCAGTGGAATACAGGATGTTTTAGTAACCTTTGTCGCTTCAAGGTCTGATGGAAAAGAAGTTACGGTTAACAACGACCAACTAAAAAAGATCAATCCAATTCTTCTAATCAATTTCTATGAGCAGCATCTCCGCTACAGCCCTACATCGTGA 1284 0.4408 MKRKATSEAPNEVVAASDAADLGGGDVGGVQVESFVGDEGTQLRKSGGEEPLVEDSEDEEEEDEDEDEEENEGGKDGAVPHVAEGAHQPVVLAENFYEVEAIRRKRVRKGQLQYFIKWRDWPETANTWEPPENLESVPDVIEAFEESLKSGKPRKRRRKHVVHHHTQPKKRLERSSTPYSLRRFSTKTAEKHTQSAPLNDPILNDVPAFPQTVLFADEVGNGGDGNSLGKATDGNANKAANGSQQNIERNEENDYDPKLSELKATSANGNDIDKLAIQFQEDKLSSGNNCQMDGTSKGDFSDTVRGAKRRKSGSVKRFKKEAHAGGLANTQNPIGTPVGTVEQARTRNPNSGGNTDHASPASNIVRIIKPIGYSASAASGIQDVLVTFVASRSDGKEVTVNNDQLKKINPILLINFYEQHLRYSPTS 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01378 427 MobiDBLite consensus disorder prediction 52 73 - -
Cca01g01378 427 MobiDBLite consensus disorder prediction 147 204 - -
Cca01g01378 427 MobiDBLite consensus disorder prediction 178 200 - -
Cca01g01378 427 MobiDBLite consensus disorder prediction 286 322 - -
Cca01g01378 427 CDD CD_CSD 97 146 - -
Cca01g01378 427 MobiDBLite consensus disorder prediction 228 248 - -
Cca01g01378 427 ProSitePatterns Chromo domain signature. 114 134 IPR023779 -
Cca01g01378 427 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 26 426 - -
Cca01g01378 427 Gene3D - 48 152 - -
Cca01g01378 427 SMART ChS_2 348 426 IPR008251 GO:0005634
Cca01g01378 427 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 26 426 IPR044251 GO:0006325|GO:0031507
Cca01g01378 427 MobiDBLite consensus disorder prediction 217 254 - -
Cca01g01378 427 ProSiteProfiles Chromo and chromo shadow domain profile. 97 156 IPR000953 -
Cca01g01378 427 SMART chromo_7 96 149 IPR000953 -
Cca01g01378 427 MobiDBLite consensus disorder prediction 1 81 - -
Cca01g01378 427 Pfam Chromo (CHRromatin Organisation MOdifier) domain 97 146 IPR023780 -
Cca01g01378 427 MobiDBLite consensus disorder prediction 152 170 - -
Cca01g01378 427 SUPERFAMILY Chromo domain-like 82 155 IPR016197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01378 Cca-Chr1 27155681 27164623 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01378 - - aprc:113849713 518.079