Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01376 ATGGCAAAAGAAGAAAAGAAGAAAGAGATTGAAGTGATCACAGCTATTTACAAAGTTAACCTGCATTGCAAGGAATGTGGGAACAAGATCAAGAGGCATCTCATGATTACCGAAGGGGTACAAAGTGTGGACATAGAATTTGAGAAGGGAGAAATTAAAGCAAAGGGGAAAATAGACCCTTTGAAAATTTTGAAGCTTATAGAGAAGAAGAGCAACAAAAAAGTTGAATTAATATCACCAAAAGTGAAGCCTAAAGAGAATACTACTACGGATACAAAGCCAAAGGAAATCAAAGATCCAATTATCCGCATTATCTCTTTGAAGGTTCACATGCATTGTGACAAATGTGAGGCTGACCTAAAGAGTAGATTAATAAAGCACAAAGGTATTTTCAATGTTAAAACCGACCAGAAAGCCCAAAGTGTGACAGTTGAAGGTACCATTGAAGTGGAGAAATTGATGTCATTTTTGAGAAAAAAGGGGCATAAAAATTCTGAGATAATTTCCATAAAGGAAGAGAAGAAGGGGAAAGAGGAAGGGAAGTCTTCTTCAGAAAGCACCAAAGAGAAGGATCATGGTGAATCAACCAAGAAAAAAGATGATAACAAAGATAAAGAAGTCAAGTCTTCTGGTGAATCAACCAAGGAAAAAAAAGGAGATACCAAGGATAATGTTCCTTATATCATTCACTATGTTTATGCCCCCCAACTTTTCAGCGATGAGAATCCAAATTCATGTTCTATTTTATGA 750 0.36 MAKEEKKKEIEVITAIYKVNLHCKECGNKIKRHLMITEGVQSVDIEFEKGEIKAKGKIDPLKILKLIEKKSNKKVELISPKVKPKENTTTDTKPKEIKDPIIRIISLKVHMHCDKCEADLKSRLIKHKGIFNVKTDQKAQSVTVEGTIEVEKLMSFLRKKGHKNSEIISIKEEKKGKEEGKSSSESTKEKDHGESTKKKDDNKDKEVKSSGESTKEKKGDTKDNVPYIIHYVYAPQLFSDENPNSCSIL 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01376 249 SUPERFAMILY HMA, heavy metal-associated domain 102 163 IPR036163 GO:0046872
Cca01g01376 249 MobiDBLite consensus disorder prediction 167 224 - -
Cca01g01376 249 Gene3D - 10 76 - -
Cca01g01376 249 Gene3D - 103 164 - -
Cca01g01376 249 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 4 1 249 - -
Cca01g01376 249 CDD HMA 107 151 IPR006121 GO:0046872
Cca01g01376 249 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7 1 249 IPR044577 GO:0046872
Cca01g01376 249 CDD HMA 21 69 IPR006121 GO:0046872
Cca01g01376 249 MobiDBLite consensus disorder prediction 167 225 - -
Cca01g01376 249 Pfam Heavy-metal-associated domain 108 162 IPR006121 GO:0046872
Cca01g01376 249 Pfam Heavy-metal-associated domain 18 72 IPR006121 GO:0046872
Cca01g01376 249 SUPERFAMILY HMA, heavy metal-associated domain 15 70 IPR036163 GO:0046872
Cca01g01376 249 ProSiteProfiles Heavy-metal-associated domain profile. 13 69 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01376 Cca-Chr1 27098178 27102908 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01376 - - ccaj:109792487 437.958