Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01358 ATGAATCTTAATGGAACGCCTAAAAAACCTTCTAGTAGTGTGACCAAACAGCACTCTCCTTCTGTCACAACCAGAATTGTGAATAATTTAAATCCTATATGCCAAGCCACCCAACAGTTAACTCTCAAGGGGAAGTTTGTGATCACATACAACCAAAGCAAATCAATACCTGGAAAATTGGTTTGTGTTCAGATTTATAGTGGGACTGATGTGGATCCTGAGACTGGTAAAGGGAAGTTGAGCGAGAAAGCCTATTTCAAATCGGGTGAGAGCATTAAACATAGCCATGATGCACAAACCATGACATATAAAATTAAGATACATGTTGACTTGCATTTTGGGACTCCAAGAGCTTTTGTGATTCAAAACCAGCATAAGAAGAAATTCTTCCTTCAGTCTGCATCTATTGAGACTTCTAACACTCGCATCATTCACTTTGATTGCAATTCCTGGATATATCCTACCAAGAAGACCAAATACGATAGACTCTTCTTCTCTAATAGATGCTACCTTCCAAGTCAGACACCAAGTTCACTAGTGGAACTAAGAAAGGAGGAGCTTGATAGATTGAAGGGTAACGGAATGGGAGAAAGAAAGGAATGGGAAAGAATCTATGACTATGACTACTATAATGACCTTGGTGATCCTGACAAAGGTCCAGACCACCTTAGACCTGTCCTCGGTGGCTCAAGGCTGTATCCATATCCTCGTAGAGGAAGAACAGGTCGAAAACATAGTACAGCAGGTCCATCAAGTGAGATCCGGCCACAACCAATGAACTTTAACATATATGTTCCATCAGATGAGAGATTTGGCCCCAACAAAATGAAGGAGTTGAAATCAAATTGTGTCCATGCTATGGGACATTTTTTATCACCAAAGTCAGAATTATATCCACGACAAAATTCTGCAAATTTTCAATCTTTGGAAGAGATACTTGACATGTTCTCTAGCAATAGGAACCAGACAATAGAGGGATGGATGATAGAAAACTTGAAGAAACTAATACCTGTTGAGCACTTAAAGGAAATAACTCAAGCAATCAAGGAAAACCGCGGGCAATTACCTATCCCTCAAATCATATCTGAAAATGAATGGGCTTGGAAAGATGATATGGAGTTTGGACGGCAAATGCTTGCAGGAACTCACCCCACCAGAATCCAGTGCTTAATGACATTCCCACCTCAAAACAAATTCGGAATAGATAGTTCAATTAAACAATCAATCATAGAACAGAAGCTAGAAGGATGGACACTTTCACAAGCAATGGAACAGGGAAGAATATTCATATTGGACCACCATGACTATCTCATTCCATATTTGAACAGAATAAATGCAAATGGGGTATGTGCTTATGCATCCAGGACTCTACTATTCTTAAGGAGTGATGGCATGCTTAAGCCATTGACAATAGAACTTAGCTTGCCTGGCCCATCTCCTCACCTTGAAATCAATAGAGTTTTTCTTCCAGCCAAGCAGGGAACACAAGCAGCACTTTGGCAACTTGCTAAAGCTCATGTTTTAGCTAATGATGCTGTTTACCATCAACTAATTAGCCATTGGTTATACACCCATGCAGTTGTTGAACCATTTATCATTGCCACCAAAAGAAGGCTAAGTGTTATGCATCCTATACACCGGTTGTTGAATCCTCATTTCAAAGACACCATGCACATAAATGCCTTGGCAAGACTCATCCTTATAAACTCAGGAGGAATTCTTGAGCGAATATTATTTCCTGGTGAAATCTGCATGCAGATATCTA 1765 0.3983 MNLNGTPKKPSSSVTKQHSPSVTTRIVNNLNPICQATQQLTLKGKFVITYNQSKSIPGKLVCVQIYSGTDVDPETGKGKLSEKAYFKSGESIKHSHDAQTMTYKIKIHVDLHFGTPRAFVIQNQHKKKFFLQSASIETSNTRIIHFDCNSWIYPTKKTKYDRLFFSNRCYLPSQTPSSLVELRKEELDRLKGNGMGERKEWERIYDYDYYNDLGDPDKGPDHLRPVLGGSRLYPYPRRGRTGRKHSTAGPSSEIRPQPMNFNIYVPSDERFGPNKMKELKSNCVHAMGHFLSPKSELYPRQNSANFQSLEEILDMFSSNRNQTIEGWMIENLKKLIPVEHLKEITQAIKENRGQLPIPQIISENEWAWKDDMEFGRQMLAGTHPTRIQCLMTFPPQNKFGIDSSIKQSIIEQKLEGWTLSQAMEQGRIFILDHHDYLIPYLNRINANGVCAYASRTLLFLRSDGMLKPLTIELSLPGPSPHLEINRVFLPAKQGTQAALWQLAKAHVLANDAVYHQLISHWLYTHAVVEPFIIATKRRLSVMHPIHRLLNPHFKDTMHINALARLILINSGGILERILFPGEICMQIS 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01358 588 SMART LH2_4 40 167 IPR001024 GO:0005515
Cca01g01358 588 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 169 588 IPR013819 GO:0016702|GO:0046872
Cca01g01358 588 PRINTS Plant lipoxygenase signature 452 476 IPR001246 GO:0016491
Cca01g01358 588 PRINTS Plant lipoxygenase signature 162 183 IPR001246 GO:0016491
Cca01g01358 588 PRINTS Plant lipoxygenase signature 234 253 IPR001246 GO:0016491
Cca01g01358 588 PRINTS Plant lipoxygenase signature 201 217 IPR001246 GO:0016491
Cca01g01358 588 PRINTS Plant lipoxygenase signature 136 154 IPR001246 GO:0016491
Cca01g01358 588 PRINTS Plant lipoxygenase signature 353 369 IPR001246 GO:0016491
Cca01g01358 588 Gene3D - 512 588 - -
Cca01g01358 588 Pfam Lipoxygenase 179 588 IPR013819 GO:0016702|GO:0046872
Cca01g01358 588 Gene3D PLAT/LH2 domain 33 188 - -
Cca01g01358 588 Coils Coil 588 588 - -
Cca01g01358 588 ProSitePatterns Lipoxygenases iron-binding region signature 2. 542 552 IPR020834 GO:0016702|GO:0046872
Cca01g01358 588 ProSiteProfiles PLAT domain profile. 42 166 IPR001024 GO:0005515
Cca01g01358 588 MobiDBLite consensus disorder prediction 220 259 - -
Cca01g01358 588 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 52 170 IPR036392 GO:0005515
Cca01g01358 588 PANTHER LIPOXYGENASE 96 588 - -
Cca01g01358 588 MobiDBLite consensus disorder prediction 1 21 - -
Cca01g01358 588 PRINTS Lipoxygenase signature 497 514 IPR013819 GO:0016702|GO:0046872
Cca01g01358 588 PRINTS Lipoxygenase signature 535 555 IPR013819 GO:0016702|GO:0046872
Cca01g01358 588 PRINTS Lipoxygenase signature 515 532 IPR013819 GO:0016702|GO:0046872
Cca01g01358 588 SUPERFAMILY Lipoxigenase 171 587 IPR036226 -
Cca01g01358 588 Gene3D - 386 511 - -
Cca01g01358 588 Gene3D - 294 384 IPR027433 -
Cca01g01358 588 PANTHER LIPOXYGENASE 96 588 IPR000907 GO:0016702|GO:0046872
Cca01g01358 588 Pfam PLAT/LH2 domain 67 165 IPR001024 GO:0005515
Cca01g01358 588 Gene3D - 189 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01358 Cca-Chr1 26194480 26201505 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01358 40 588 Acyl Lipid Metabolism Gene Families AT3G22400 45.230 7.26e-164 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01358 K00454 - gmx:100797946 1082.78