Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01350 ATGAACCAAACCACCGTCACCAGCTTTGAAAAACCAATAGGCTGTTACGCTCCGTCAGTTCAAGAGCTTATTGTTATTGACGATGTGCTCTCGGCCATGGTTGGCATTGAAGGACGTTATATCTTAATAAAAACAGTTCGGGGAAAGAATGATGATATTTCTTTCCTGGTTGACCCATCAACGGATTTGGCCCTGCAGGAATTGGCAAAACGGATATTCCCTCTTTGCAAGTACTTTCTGTTGATCAACCAGTTTGTGGAGTCAAGGTCTCAGTTCCAGAGTGGCCTGGTTAATCATGCCTTTTCTGCTGCACTGAGGGCACTTCTTCTCGATTACCAGGCTATGGTGGCACAGCTTGAACACCAATTTCGTCTTGGGAGACTTTCCCTCCAGGGATTGTGGTTCTACTGTCAGCCCATGATGAGGTCAATGCAGGCACTGTCCACTGTCATACAGAAGGCTTCAGTCAACAATTTTTCTGGTTCTGCTGTTCTTAACTTACTGCAGAGCCAGGCAAAAGCTATGGCCGGAGATAATGCTGTCAGGTTGTTGCTTGAGAAAATGACACAATGTGCAAGCAGTGCTTATATGAGCATATTAGAAAGATGGGTTTACGAAGGTGTAATAGATGATCCTTATGGTGAATTTTTCATCGCAGAGGACAAATCTCTTCAAAAGGAGAGTCTCACTCAAGATTATGAAGCTAAGTATTGGCGACAACGTTACAGCCTCAAAGATGGAATTCCTAGTTTCCTTGCAAATATTGCTGGGACAATTTTGACAACAGGAAAATATCTAAATGTCATGAGAGAATGTGGGCACAATGTTCAGGTCCCTCCATCAGAAAATTCAAAATTAATGAATTTTGGCTCAAATCATCATTATCTTGAGTGTATTAAGGCTGCTTATAACTTTGCAAGTGGTGAACTCTTGAATCTCATCAAGGAAAAGTATGATCTAACAGGAAGGCTGCGTTCTATAAAACACTACCTTCTTCTTGATCAGGGTGATTTCTTGGTACATTTTATGGATATTGCTCGAGATGAGTTAGCTAAAAAGCCTGATGAAGTCTCAGTTGAGAAGCTGCAGTCTCTTCTAGACCTTGCATTGCGTACTACAGCAGCTGCAGCAGATCCTTTTCATGAAGGCTTAACTTGTGTTGAAAGATCTTCTTTGCTTAGAAGGTTGGACACATTTAATGATCTTGAAGTTGGTCAGAGAAATTCTGGTAACAATGATCTAGAGGAGCCTGTTAGCATCACTGGCCTTGAAACATTTTCACTTAGTTACAAGGTGCAGTGGCCATTATCTATAGTATTATCACGTAAAGCCCTTGCAAAGTACCAATTAATTTTTCGATTTCTGTTCCATTGTAAACATGTTGATCGACAGTTGTGTGGAGCATGGCAAGTACATCAGGTATGGCTGAGTGCGCTTACTCTACTTTGTCTATTTGTGTTGTATCTCCTTTCACACCATTTTGATTCTATATTGCAGGGAGTTCGTTCTATTAATACACGTGGAACTGCTATCTCCAGATCATCTCTTCTTTGCAGGAGTATGCTTAAATTTATTAATAGCCTTTTGCACTACCTGACATTTGAGGTTATTGAACCCAATTGGCATCTGATGTATAACAGACTTCAGTCAGCAAATAGCATAGATGAGGTTATACAACATCATGATTTTTTCCTTGATAAATGTTTGAGAGAATGTTTACTTCTTTTACCTGAGCTGCTGAAGAAGGTGGAGAGGCTTAAATCCATGTGCCTACAATATGCAGCGGCAACTCAGTGGCTCATATCATCTTCTATTGAATTACATAATCCAGAGGAACTTATTGATGATTCAATTGGCTTGAATAAAGGCAAATATCGGAAATCAGGTCAGGTCCTGAAGTCAACCACTAGAAATGTGGCAGTCACTGATTCTGTCCTCAAATTTGAGAAAGAGTTTAATACCGAGCTTCAGAGTCTTGGATCAATCTTGAGTAGTAGCTCCCAGGCAGAGCCATATCTAGCTCATCTTGCACAATGGATTGTTGGTGTTAAAAATGAACAGAAAGAATTTTGGTGGTTAACAGACTCTGATGGTGTGTTTGGATTAGGCATGGCAATCTAA 2121 0.4055 MNQTTVTSFEKPIGCYAPSVQELIVIDDVLSAMVGIEGRYILIKTVRGKNDDISFLVDPSTDLALQELAKRIFPLCKYFLLINQFVESRSQFQSGLVNHAFSAALRALLLDYQAMVAQLEHQFRLGRLSLQGLWFYCQPMMRSMQALSTVIQKASVNNFSGSAVLNLLQSQAKAMAGDNAVRLLLEKMTQCASSAYMSILERWVYEGVIDDPYGEFFIAEDKSLQKESLTQDYEAKYWRQRYSLKDGIPSFLANIAGTILTTGKYLNVMRECGHNVQVPPSENSKLMNFGSNHHYLECIKAAYNFASGELLNLIKEKYDLTGRLRSIKHYLLLDQGDFLVHFMDIARDELAKKPDEVSVEKLQSLLDLALRTTAAAADPFHEGLTCVERSSLLRRLDTFNDLEVGQRNSGNNDLEEPVSITGLETFSLSYKVQWPLSIVLSRKALAKYQLIFRFLFHCKHVDRQLCGAWQVHQVWLSALTLLCLFVLYLLSHHFDSILQGVRSINTRGTAISRSSLLCRSMLKFINSLLHYLTFEVIEPNWHLMYNRLQSANSIDEVIQHHDFFLDKCLRECLLLLPELLKKVERLKSMCLQYAAATQWLISSSIELHNPEELIDDSIGLNKGKYRKSGQVLKSTTRNVAVTDSVLKFEKEFNTELQSLGSILSSSSQAEPYLAHLAQWIVGVKNEQKEFWWLTDSDGVFGLGMAI 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01350 706 Pfam Gamma tubulin complex component C-terminal 320 677 IPR040457 GO:0043015
Cca01g01350 706 PANTHER GAMMA-TUBULIN COMPLEX COMPONENT 496 682 - -
Cca01g01350 706 PANTHER GAMMA-TUBULIN COMPLEX COMPONENT 12 474 - -
Cca01g01350 706 Gene3D - 320 681 IPR042241 -
Cca01g01350 706 Pfam Gamma tubulin complex component N-terminal 26 317 IPR041470 -
Cca01g01350 706 PANTHER GAMMA TUBULIN COMPLEX PROTEIN 496 682 IPR007259 GO:0000226|GO:0000922|GO:0005815|GO:0007020|GO:0043015
Cca01g01350 706 PANTHER GAMMA TUBULIN COMPLEX PROTEIN 12 474 IPR007259 GO:0000226|GO:0000922|GO:0005815|GO:0007020|GO:0043015
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01350 K16569 - gmx:100795585 1167.14