Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01343 ATGGAAGAGTATTACTACAAGAGGCACCACATGCATGTGCCAGCGTTTGGAAGCTGGGATTGGAATGATAATCTTCCTTTCACACAATGCTTCGAGTCTGCGAGACAAGCTGGTTTGCTTAGGTATAGTTACTCGGAGTCTGAAGATAGAGATCTTTATGTCACTGGGGACTTGTACGAGAATGATGTTGTCACACCCGCTATGATCGTTGTTCCTCGCAAAAGGGAAAAGGTACGTTGCCAGAATGAAAAAGAAGAAAAAAAGCAGAATTGGGTGAGTAACGTGAAAGAGGTACCTACCCCAACTAGTccaatgccaatgccaagaccaaaaccaaagccTGTGGATGAGGACTTGTACAAGATCTCACCAGAGCTTCTTTATGCCAAAACTAGGAAGAAGAGAGGGTTGTGTTTCTTCCCTAGCTGCTTCACACCAACTTGCATTGCCTGA 453 0.4128 MEEYYYKRHHMHVPAFGSWDWNDNLPFTQCFESARQAGLLRYSYSESEDRDLYVTGDLYENDVVTPAMIVVPRKREKVRCQNEKEEKKQNWVSNVKEVPTPTSPMPMPRPKPKPVDEDLYKISPELLYAKTRKKRGLCFFPSCFTPTCIA 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01343 150 MobiDBLite consensus disorder prediction 80 116 - -
Cca01g01343 150 PANTHER EXPRESSED PROTEIN 1 149 - -
Cca01g01343 150 PANTHER PATHOGENIC TYPE III EFFECTOR AVIRULENCE FACTOR AVR AVRRPT-CLEAVAGE: CLEAVAGE SITE PROTEIN-RELATED 1 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01343 Cca-Chr1 25530443 25533678 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01343 - - gmx:100306260 267.314