Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01337 ATGAAGTTCGATCTCACGCCTCTTTACCGTGCTTGTCATATTCATGGTTGCCTGGGGATCCGAGAGCAGTTTCATGAATATTACTATAAGAATAGATTGTTACAATTGAATTCAGATTTGGAAATATCTTCGGCGCAACCTTTCGTTGAATCATATCAGACATTTTTGGCTCAAATTGTTGGGTACTTCATAGTGGAGGATAAGGTCCTGAGGACTGGTGGTGGGCTACTAGTACCTGACAAGGTCGAAACTATGTGGGAAACTGCTTTGGCAAAAATAACATCAATGTTGGACGTGCAATTCTCCCATATGAACTCTGCCACCCATCTTCTCCTAGTTAAGGATTATGTTACTCTTCTTGGGTCTACTCTTAGACAATATGGATATGACATTGGTCAACTTCTTGATGTGCTTGATAATAGCTGTGACAAATACCATAGACTTCTTTTAGAAGAATGTCGGAGCCAAACTCAAGATGTTCTTGGCAACGACTCATATGAGCAGATGGTGATAAAAAAGGATACTGACTATGAGAATCATGTTCTGTCATTTAATATTCAAACATCTGATATTATGCCTGCTTTTCCATATGTTGCACCATTCTCCTCCATGGTGCCTGATGCTTGTCGCATTGTGAGATCCTTCATTAAAAGCTCTGTTGATTACTTGTCTTACGGTGTACGTACTGGTTTCTTTGATGTTGTGAGAAAGTATTTGGACAAGTACCTGATTGAAGTATTAAATGAAACTTTACTAGATACAATAAATAGTGGAAATATCAGTGTGTCTCAAGCCATGCAGCTTGCTGCAAACATAGCTGTTCTTGAAAGAGCTTGTGATTATTTCCTTAGACATGCAGCTCAACTGAGCTGTGTCCCAGTTCGAACAGTTGAGAAGCCCCAAGCTACTTTAACTGCAAAGGTGTTACTGAAGACTTCGAGGGATGCAGCTTATATTACTTTGCTCAGTTTGGTAAACACAAAATTAGATGAATATATGAATCTTATAGAAATTATCAACTGGACTTCAGAGGAGCCAAAGCCAAATGGAAATGAGTACATAAATGAAGTAATCTTTTATCTTGATTCACTTATGTCCACAGCCCAACAAATTTTACCCTTAGATGCTATGTACAAGGTTGGAACTGGTGCACTTGAGCATATTTCCAATATAATTGTGGGTGCTTTCCTTAGTGATATTGTCAAAAGGTTTAATGCAAATGCAGTTATGAATATAAACAATGACCTTAAGATGCTAGAGGACTTTGCACATGAGAGGTTCTATACTTCTGGCTTGGGTGAAATTTACAGGGAAGGTAGTTTTAAGAGCTGTTTGATAGAAGCACGACAATTAATTAATCTTCTGTCAAGTAGTCAGCCTGAGAACTTCATGAATCCTGTTATAAGAGAGAAAAATTACTATGCGTTGGATTATAAGAAGGTAGGCAGCATTTGTGATAAATTCAAGGATTCTGCAGATGGGATCTTTGGAAGTCTTTCGAATAAAAATACAAAGCAAACTGCTAAAAAGAAATCAATGGACATGCTCAAAAAGCGACTTAAGGATTTCAATTGA 1575 0.3778 MKFDLTPLYRACHIHGCLGIREQFHEYYYKNRLLQLNSDLEISSAQPFVESYQTFLAQIVGYFIVEDKVLRTGGGLLVPDKVETMWETALAKITSMLDVQFSHMNSATHLLLVKDYVTLLGSTLRQYGYDIGQLLDVLDNSCDKYHRLLLEECRSQTQDVLGNDSYEQMVIKKDTDYENHVLSFNIQTSDIMPAFPYVAPFSSMVPDACRIVRSFIKSSVDYLSYGVRTGFFDVVRKYLDKYLIEVLNETLLDTINSGNISVSQAMQLAANIAVLERACDYFLRHAAQLSCVPVRTVEKPQATLTAKVLLKTSRDAAYITLLSLVNTKLDEYMNLIEIINWTSEEPKPNGNEYINEVIFYLDSLMSTAQQILPLDAMYKVGTGALEHISNIIVGAFLSDIVKRFNANAVMNINNDLKMLEDFAHERFYTSGLGEIYREGSFKSCLIEARQLINLLSSSQPENFMNPVIREKNYYALDYKKVGSICDKFKDSADGIFGSLSNKNTKQTAKKKSMDMLKKRLKDFN 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01337 524 Gene3D Dsl1p vesicle tethering complex, Tip20p subunit, domain D 313 463 IPR042044 -
Cca01g01337 524 Pfam Exocyst complex subunit Sec15-like 177 488 IPR046361 -
Cca01g01337 524 PANTHER SEC15 1 524 IPR007225 GO:0006886|GO:0090522
Cca01g01337 524 Gene3D - 131 305 IPR042045 -
Cca01g01337 524 PANTHER EXOCYST COMPLEX COMPONENT 1 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01337 Cca-Chr1 25300283 25301858 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01337 K19985 - gmx:100796988 936.406