Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00467 ATGGACGACAACAGCATCAAAACGGTGCGTTTCGGCATCCTAGGCTGCGCCAACATCGCTCGGAAAGTGGCTCGAGCCATCGCTCTCGCCCCGAACGCCACTCTCTGCGCCATCGCCAGCCGTTCCAAGGAGAAGGCCGAGAAGTTCGCCGCCGAGAACGCCTTTCCGGCGAGCGTTAGGATTTACGGGAGCTACGATCAGGTGCTGGAGGACCCAGGCGTGGACGCCGTGTACGTCCCCCTCCCCACCGCTTTGCACGTGCGGTGGGCGGTTATGGCCGCCGCTAGAAACAAACACGTGCTGCTGGAGAAGCCCGTCGCTCTTCACGTGGCCGACCTTGATCGAATCCTCGAAGCCTTCGAATCCAACGGCGTCCAGTTCATGGACGGTAGCATGTGGTTGCATCACCCTAGAACTGCTCGCATTCAGAGCTTCTTATCTTCTTCTAACACCATTGGACCAATTCGTTTTATCCACAGCACATCAACAATGCCAGCACCACCTGAGTTCCTGGAGAATGACATTAGAGTAAAGCCAGAGTTGGATGGTCTTGGTGCACTTGGTGACTTGGCCTGGTACTGCATTGGTGCTTCCTTGTGGGCAAAGGGCTACCAACTACCAACCTCTGTCACTGCTCTTCCTGATGTCACAAGGAACAACGCTGGAGTCATCTTGTCCATCACAGCCTCTTTGCTGTGGGACCAACCACACCAAACACTTGCAACCATTCACTGCTCGTTTCTTTCTCACACCTCCATGGACCTGGCCATATGTGGTTCCAATGGCTCTCTGCATCTCAGGGACTTCATAATCCCCTACCACGAGACTAGTGCTTCGTTTGACCTCACAGTTGGTGCCAAGTTTGTTGACCTTCACATTGGGTGGAACGTGAGACCAGAGGAAGTTCATGTGGCCACTGAGCTCCCACAAGAAGCTCTAATGGTGCAAGAGTTTTCTAGGCTTGCTGCAAGCATTAGAGATTGTGGGTCGCGACCCTCTACCAAGTGGCCTGAAATCAGTAGAAAAACTCAACTGGTAGTTGATGCAGTGAAGAAGTCCCTAGAGCTTGGCTGCAAACCTGTTTGCTTGTAG 1092 0.5357 MDDNSIKTVRFGILGCANIARKVARAIALAPNATLCAIASRSKEKAEKFAAENAFPASVRIYGSYDQVLEDPGVDAVYVPLPTALHVRWAVMAAARNKHVLLEKPVALHVADLDRILEAFESNGVQFMDGSMWLHHPRTARIQSFLSSSNTIGPIRFIHSTSTMPAPPEFLENDIRVKPELDGLGALGDLAWYCIGASLWAKGYQLPTSVTALPDVTRNNAGVILSITASLLWDQPHQTLATIHCSFLSHTSMDLAICGSNGSLHLRDFIIPYHETSASFDLTVGAKFVDLHIGWNVRPEEVHVATELPQEALMVQEFSRLAASIRDCGSRPSTKWPEISRKTQLVVDAVKKSLELGCKPVCL 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00467 363 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 161 IPR036291 -
Cca01g00467 363 Pfam Oxidoreductase family, NAD-binding Rossmann fold 9 128 IPR000683 GO:0000166
Cca01g00467 363 Gene3D - 5 135 - -
Cca01g00467 363 Gene3D Dihydrodipicolinate Reductase; domain 2 136 363 - -
Cca01g00467 363 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 4 363 - -
Cca01g00467 363 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 136 321 - -
Cca01g00467 363 PANTHER - 4 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00467 Cca-Chr1 5843964 5846073 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00467 - - gmx:100785424 622.468