Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00450 ATGGCGCTAAACGTTCTCTCTCTCTTCTTCCTCCTATTCACCTTTCACCTTCCCTCCTGCTTCTCTGGACAATCCAGCTCCATGGAATCAGTTCCCGATCTTCAGAACACCATGTACGCTGCCGTCGATGGTTATCCTTGTGTGCGGCTGCTGAATCTCTCTGGAAGCATCGGTTGTTCAAATCCTGGACGAGATAAGGTTGTGGCTCCAATTGTAAGGTTTGAAAATGTTGACAAACTAGCAGAGCCATCTGCTATATTGGTGTCACTCGATGAATTTCCAACTCTCTTTACTAGAATATCAGATGACTCTAGCATTGCTAGTAAAGTTGGCGGTGTACTCGTTGAACCAAGAATTGATTTGCAGAATAACTTAAAGGGATTCTCTCCGGATCAGAAGTTTCCGCAAGCTCAATTCGCTCCTTACTATAATACCAGCTATGAATGGAATCCAATTGGTTCTGGTATTATGTGGAAATCCTACGGTTTTCCTGTATTTTTACTCACAGAAAGTGGCTCAAAGACTCTTCAAGAGTTTGTAGCAAAGAATGAGGACAAAAAGAAAGCTTATACTTCTAAGGTGGCTGAGTTTGATCTGGTGATGCAGACAGTGAAATCTGGAACACATGATTCAGAGTCTTGTTTAAAAGAAGCAACTTGCCTTCCTTTAGGTGGATACAGTGTCTGGTCATCTCTTCCTCCGATCAACATTTCATCATTACAACAGCCTAAGCCCATTTTATTGACAGTGGCATCTATGGATTCTGCTTCATTTTTTCGGGACAAAAGCCTTGGTGCAGACTCCCCTATTTCTGGTTTAATTGCTTTACTGGCAGCTGTTGATGCGCTTTCTTATGTGGATGGTCTTGGTGACCTTAGTAAACAGCTTGTTTTTGCAGTTTTCACTGGAGAGGCATGGGGTTACCTTGGAAGTAGGAGATTCTTGGAAGAACTTGACATGCACTCAGATGCTGTTCGTGGCCTTAATCATACATTAATAGAAACGGTCATTGAAATTGGTTCTGTTGGAAAGGGTCTCAGTCAAGGTGTTAAAAACTTTTTTGCTCATACAGAAGGGGATTCTTCTGCCACAAATCAGACATTGGTTGCCTTGAAACGTGCACAGGAGTCGCTGCCATCTGAAAACATAAAGATAGCTTCTGCAAGTGCCTCAAATCCTGGGATACCTCCATCCTCTTTAATGACATTTTTGGAAAAGAATCCTTCAATCTCTGGTCTTGTCCTTGAAGATTTTGACTCTGCCTTTGTCAACAAGTTCTACCATAGTCATCTTGATGATTTATCAAATGTAAATTCATCAGCTGTAGTTGCTGCTGCTTCTCTTATTGCCCGAACCCTTTACATGCTTGCTAGTGAAATTGAAGATGTACAAGATTCAACTTTGGCTTCTATAAATGTTAATGCCTCCCTTGTTAAACAACTTATGGGTTGCTTGTTGGACTGTGATCCTGGTCTTTCTTGCGAATTGGTGAAGAAATATATTTCACCCATGTCATCCTGTCCAAGCCATTATGTTGGTGTTATCTTGGACGAACCTTCTTCTACGCCATTTACAGGATACATCAATGATGTTCCCAGGTTCATCTGGAATTTTCTGTCTGACAGAACTTCTATCCCGAGGGAGAATAACATCTCAGGTTGTCAACAAGGTTGCAAAGGTAGGGATGAAGTTTGCATCAAAGCAGAGGCTGATGGCAAGGGAGTTTGTGTTCTCTCTACAACGAGGTATGTTCCAGCATATTCAACACGGCTAAAATTTGAATCGGGAGTGTGGAATGTTTTACCCCCTAATTCCTCTGACAAAATGGGGGTTGCGGACCCCATCTGGACAGAGAGCAACTGGAATTCAATAGGTATTCGGGTCTACACAGTCCAAAATGCTTCTTATGATCGTCTTGTTCTGCTTGGGGGAATCACTCTGACAATCTTCGCATACCTTGCAATAGCAACCGCGAGAGCCATTTTATCCAAAGCCATGAAGAGGGATTGA 2010 0.4239 MALNVLSLFFLLFTFHLPSCFSGQSSSMESVPDLQNTMYAAVDGYPCVRLLNLSGSIGCSNPGRDKVVAPIVRFENVDKLAEPSAILVSLDEFPTLFTRISDDSSIASKVGGVLVEPRIDLQNNLKGFSPDQKFPQAQFAPYYNTSYEWNPIGSGIMWKSYGFPVFLLTESGSKTLQEFVAKNEDKKKAYTSKVAEFDLVMQTVKSGTHDSESCLKEATCLPLGGYSVWSSLPPINISSLQQPKPILLTVASMDSASFFRDKSLGADSPISGLIALLAAVDALSYVDGLGDLSKQLVFAVFTGEAWGYLGSRRFLEELDMHSDAVRGLNHTLIETVIEIGSVGKGLSQGVKNFFAHTEGDSSATNQTLVALKRAQESLPSENIKIASASASNPGIPPSSLMTFLEKNPSISGLVLEDFDSAFVNKFYHSHLDDLSNVNSSAVVAAASLIARTLYMLASEIEDVQDSTLASINVNASLVKQLMGCLLDCDPGLSCELVKKYISPMSSCPSHYVGVILDEPSSTPFTGYINDVPRFIWNFLSDRTSIPRENNISGCQQGCKGRDEVCIKAEADGKGVCVLSTTRYVPAYSTRLKFESGVWNVLPPNSSDKMGVADPIWTESNWNSIGIRVYTVQNASYDRLVLLGGITLTIFAYLAIATARAILSKAMKRD 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00450 669 Pfam Nicastrin 245 454 - -
Cca01g00450 669 Pfam Nicastrin small lobe 46 203 IPR041084 -
Cca01g00450 669 PANTHER NICASTRIN 19 668 IPR008710 GO:0016021|GO:0016485
Cca01g00450 669 SUPERFAMILY Zn-dependent exopeptidases 219 455 - -
Cca01g00450 669 CDD M28_Nicastrin 40 622 - -
Cca01g00450 669 Gene3D Zn peptidases 170 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00450 Cca-Chr1 5560429 5567381 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00450 K06171 - gmx:100818367 1198.34