Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00449 ATGCATTCGTTCGGCTATAGAGCCAACGCGTTGGTGACCTTTGCCGTAACGATTCTGGCCCTTATGTGCGGCATGGCCTCTCTATCCGACAACTTCAACTCCCCCTCTCCCTCTGCGCATGTCCAGGTGTTGAACATCAACTGGTTTCAAAAACAGCCCAAGGCCAACGACGAGGTGAGCATGACATTGAATATTTCAGCAGATTTGCAGTCTCTTTTCACATGGAACACAAAACAGGTTTTTGTTTTTCTAGCTGCTGAGTATGAAACTCCTAAGAATTCCTTGAATCAGATATCTCTATGGGATGGCATCATTCCCAATAAAGAGCATGCAAAGTTTTGGATTCATACATCAAATAAGTACCGATTCATTGACCAGGGTAGCAATTTGCGTGGCAAAGAATATAACCTAACCATGCATTGGCATGTTATGCCGAAGACGGGCAAAATGTTGGCAGATAAAATAGTCATGCCAGGTTACCGGTTGCCAGAGGAATATAGATGA 504 0.4425 MHSFGYRANALVTFAVTILALMCGMASLSDNFNSPSPSAHVQVLNINWFQKQPKANDEVSMTLNISADLQSLFTWNTKQVFVFLAAEYETPKNSLNQISLWDGIIPNKEHAKFWIHTSNKYRFIDQGSNLRGKEYNLTMHWHVMPKTGKMLADKIVMPGYRLPEEYR 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00449 167 PANTHER SIGNAL PEPTIDASE COMPLEX SUBUNIT 3 1 167 - -
Cca01g00449 167 PIRSF SPC3 1 167 IPR007653 GO:0005787|GO:0006465|GO:0016021
Cca01g00449 167 Pfam Signal peptidase subunit 1 165 IPR007653 GO:0005787|GO:0006465|GO:0016021
Cca01g00449 167 PANTHER MICROSOMAL SIGNAL PEPTIDASE 23 KD SUBUNIT SPC22/23 1 167 IPR007653 GO:0005787|GO:0006465|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00449 Cca-Chr1 5555182 5558745 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00449 K12948 - gmx:100306631 328.561