Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00447 ATGGGGTTCGGTTTGTTAGCTTCGAAGGCCGTGAGACCAACCTCGAGGCTCCTCGGTTCGCAAAACCCTAGCGCCTTCCTCCTCCGAACCATTGTCTCCAAGACCGAGCTTCGGAATCCCGAGgcctccgccgcgcagacggagcagcctccgccggcggatctcccgccgcggacgccgctcgccggcgcgcgcGTCCATTTCACCAACCCCGAAGATGCCATCGAGGTGTTCGTCGACGGTTATCCCGTGAAAATCCCCAAGGGAATGACCGTTCTCCAGGCCTGCGAGGTCGCCGGCGTCGACATTCCTCGGTTCTGCTACCACAGCAGACTCTCCATCGCCGGCAATTGCCGCATGTGCCTCGTCGAGGTCGAGAAATCTCCCAAGCCTGGTGGGGAATGTGATCTTCAGGATCAGTCAATGGCATTTGGCTCTGATCGTGGGCGGTTCACTGAAATGAAGAGATCTGTTGTGGATAAAAATCTTGGACCTTTGGTGAAGACTGTGATGACTCGGTGCATTCAATGTACAAGGTGTGTTAGATTTGCAACAGAGGTTGCTGGGGTTCAGGATCTTGGCATGTTAGGTCGTGGCAGTGGAGAGGAGATTGGAACATATGTTGAAAAACTTTTGACAAGTGAGCTTTCTGGAAATGTCATTGATATCTGTCCGGTGGGAGCTCTCACTTCAAAACCTTTTGCATTTAAAGCCCGAAATTGGGAGTTGAAGGGAACAGAGACCATTGATGTTACTGATGCTGTTGGATCCAATATTCGAATTGATAGTAGAGGACCTGAAGTGATGCGCATTGTTCCTCGTTTAAATGAGGACATAAATGAAGAATGGATTTCGGACAAAACTCGCTTTTGTTATGATGGTTTGAAAAGGCAGAGGCTAAATGACCCCATGATCCGTGGTCCTGATGGACGCTTCAAGCCTGTTAACTGGCGTGATGCCCTTGCTGTGGTAGCAGAGATTGCCCATCAAGTTAAACCAGAAGAAATAGTTGGAATAGCTGGCAAACTTTCTGATGCCGAGTCCATGATTGCTCTAAAAGATTTCTTAAATAGGATGGGGTCAAATGATGTATGGGGAGAAGGCATCAGTGTAAATACTAATGCTGATTTCAGATCTGGATATATTATGAATACTAGCATTGCTGGTCTTGAAAAAGCGGATGTGTTCCTGTTGGTTGGTACCCAGCCACGTGTGGAAGCTGCTATGGTTAATGCCAGAATACGCAAGACTGTCAGAGCAAACCAAGCCAAAGTGGGGTACATTGGACCTGCTACTGATTTCAACTATGATCACAAACATCTTGGTACTGACCCTCAAACACTTCTTGAAATTGCTGAGGGTAGCCACCCATTTTTCAAGACACTCTCAAATGCCAAAAATCCTGTTATCATTGTGGGTGCTGGGGTCTTTGAGAGGAAGGACCAGGATGCAATTTTTGCTGCCGTTGAAACCATTGCACAAAAAGCAAATGTTGTCCGTCCTGACTGGAATGGTCTTAATGTATTGCTTCTCCACGCTGCCCAGGCTGCTGCACTTGACCTTGGACTTGTTCCGCAATCTGAGAAAGCCCTCGAGTCCGCAAAATTTGTATATTTGATGGGTGCTGATGATGTAAACTTAGACAAGGTCCCAGATGATGCTTTTGTTGTTTATCAAGGTCACCATGGTGACAAGAGTGTCTATCGTGCCAATGTTATTTTGCCAGCAGCAGCATTCAGTGAGAAGGAAGGAACATACGAAAATACTGAAGGATGTGCGCAACAAACATTGCCTGCAGTTCCAACAGTTGGTGACTCCAGAGATGATTGGAAAATAATTCGAGCTCTGTCTGAGGTGGCAGGAGTGCGATTGCCCTATGACACAGTTGGAGCTGTTCGGGCCCGAATCAGGATTGTAGCTCCAAACCTTGTGAACATGGATGAGAGAGAGCCAGCCACATTGCCATCTTCACTGAGACCAACCTTCTCTGAGAAGGTAGACCCAACTCCATTCGGGACTGTCATTGAGAATTTCTATATGACTGACGCCATTACCAGGGCATCAAAGATAATGGCACAATGCAGTGCTATGCTGTTGAAGAAGTGA 2106 0.4525 MGFGLLASKAVRPTSRLLGSQNPSAFLLRTIVSKTELRNPEASAAQTEQPPPADLPPRTPLAGARVHFTNPEDAIEVFVDGYPVKIPKGMTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLLTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNIRIDSRGPEVMRIVPRLNEDINEEWISDKTRFCYDGLKRQRLNDPMIRGPDGRFKPVNWRDALAVVAEIAHQVKPEEIVGIAGKLSDAESMIALKDFLNRMGSNDVWGEGISVNTNADFRSGYIMNTSIAGLEKADVFLLVGTQPRVEAAMVNARIRKTVRANQAKVGYIGPATDFNYDHKHLGTDPQTLLEIAEGSHPFFKTLSNAKNPVIIVGAGVFERKDQDAIFAAVETIAQKANVVRPDWNGLNVLLLHAAQAAALDLGLVPQSEKALESAKFVYLMGADDVNLDKVPDDAFVVYQGHHGDKSVYRANVILPAAAFSEKEGTYENTEGCAQQTLPAVPTVGDSRDDWKIIRALSEVAGVRLPYDTVGAVRARIRIVAPNLVNMDEREPATLPSSLRPTFSEKVDPTPFGTVIENFYMTDAITRASKIMAQCSAMLLKK 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00447 701 ProSitePatterns Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. 104 121 IPR000283 GO:0008137|GO:0016020|GO:0042773
Cca01g00447 701 ProSitePatterns Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3. 173 183 IPR000283 GO:0008137|GO:0016020|GO:0042773
Cca01g00447 701 MobiDBLite consensus disorder prediction 39 62 - -
Cca01g00447 701 CDD MopB_Res-Cmplx1_Nad11 247 620 - -
Cca01g00447 701 Pfam NADH-ubiquinone oxidoreductase subunit G, C-terminal 663 694 IPR015405 GO:0016651|GO:0051536
Cca01g00447 701 Gene3D - 74 181 - -
Cca01g00447 701 Pfam 2Fe-2S iron-sulfur cluster binding domain 73 129 - -
Cca01g00447 701 CDD fer2 75 150 IPR001041 GO:0051536
Cca01g00447 701 SUPERFAMILY 2Fe-2S ferredoxin-like 75 129 IPR036010 GO:0051536
Cca01g00447 701 ProSiteProfiles Prokaryotic molybdopterin oxidoreductases 4Fe-4S domain profile. 243 299 IPR006963 GO:0016491
Cca01g00447 701 PANTHER NITRATE, FORMATE, IRON DEHYDROGENASE 52 655 - -
Cca01g00447 701 Gene3D - 528 651 - -
Cca01g00447 701 Gene3D - 234 349 - -
Cca01g00447 701 Pfam Molybdopterin oxidoreductase 299 618 IPR006656 GO:0016491
Cca01g00447 701 TIGRFAM NuoG: NADH dehydrogenase (quinone), G subunit 132 616 IPR010228 GO:0016651|GO:0051536
Cca01g00447 701 PANTHER NADH-UBIQUINONE OXIDOREDUCTASE 75 KDA SUBUNIT, MITOCHONDRIAL 52 655 - -
Cca01g00447 701 SUPERFAMILY Formate dehydrogenase/DMSO reductase, domains 1-3 241 647 - -
Cca01g00447 701 SUPERFAMILY 4Fe-4S ferredoxins 129 239 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00447 K03934 - gmx:100802040 1301.96