Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00441 ATGTCGTTGCTCTCAGATCTCATCAACCTTAACCTCTCCGACACCACCGAGAAGGTGATCGCAGAGTACATATGGATCGGTGGATCAGGAATGGACCTAAGGAGCAAAGCAAGGACTCTCCCAGGACCAGTTAGCGACCCTTCAGAGCTGCCCAAGTGGAATTATGATGGTTCCAGCACAGGTCAAGCTCCTGGAGAAGACAGTGAAGTGATTATATATCCACAAGCCATTTTCCGGGATCCATTCAGAAGGGGCAACAATATCTTGGTTATCTGTGATGCTTACACTCCTGCTGGAGAACCAATTCCCACTAACAAGAGGCACGATGCTGCTAAGATATTCAGCCACCCTGAAGTTGTTGCTGAAGAGCCCTGGTATGGTATTGAGCAGGAATACACCTTGTTGAAGAAAGAGGTCCACTGGCCTCTTGGGTGGCCTGTTGGTGGTTTCCCTGGACCTCAGGGGCCATACTATTGTGGTGTTGGTGCTGATAAGGCTTTTGGCCGTGACATTGTTGACGCACATTACAAAGCCTGTCTCTATGCTGGCGTTAACATCAGTGGAATCAATGGAGAAGTGATGCCCGGTCAGTGGGAATTCCAAGTGGGTCCTGCAGTTGGTATCTCAGCCGGTGACGAATTGTGGGTAGCTCGTTACATCTTGGAGAGGATCACTGAGATTGCTGGTGTGGTGCTTTCCTTTGACCCCAAGCCAATTAAGGGTGATTGGAATGGTGCTGGTGCTCACACAAACTACAGCACCAAGTCAATGAGAAATGATGGTGGCTATGAAGTGATCAAGACAGCCATTGAGAAGTTGGGGAAGAAGCACAAGGAGCACATTGCTGCTTACGGAGAAGGCAATGAGCGTCGTTTGACAGGACGACATGAAACAGCCGACATCAACACCTTCTTATGGGGAGTTGCAAACCGTGGAGCTTCTATTAGAGTTGGGAGGGACACAGAGAAAGCAGGGAAGGGATACTTTGAGGACAGAAGGCCTGCATCAAACATGGACCCATATGTGGTTACTTCCATGATTGCAAACACAACCATTCTCTGGAAGCCATGA 1071 0.4902 MSLLSDLINLNLSDTTEKVIAEYIWIGGSGMDLRSKARTLPGPVSDPSELPKWNYDGSSTGQAPGEDSEVIIYPQAIFRDPFRRGNNILVICDAYTPAGEPIPTNKRHDAAKIFSHPEVVAEEPWYGIEQEYTLLKKEVHWPLGWPVGGFPGPQGPYYCGVGADKAFGRDIVDAHYKACLYAGVNISGINGEVMPGQWEFQVGPAVGISAGDELWVARYILERITEIAGVVLSFDPKPIKGDWNGAGAHTNYSTKSMRNDGGYEVIKTAIEKLGKKHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIANTTILWKP 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00441 356 ProSiteProfiles Glutamine synthetase (GS) beta-grasp domain profile. 19 99 IPR008147 GO:0004356|GO:0006542|GO:0006807
Cca01g00441 356 PANTHER GLUTAMINE SYNTHETASE-LIKE 1 356 - -
Cca01g00441 356 SUPERFAMILY Glutamine synthetase/guanido kinase 103 352 IPR014746 GO:0003824
Cca01g00441 356 MobiDBLite consensus disorder prediction 37 66 - -
Cca01g00441 356 Gene3D Glutamine synthetase/guanido kinase, catalytic domain 104 356 - -
Cca01g00441 356 ProSitePatterns Glutamine synthetase putative ATP-binding region signature. 237 253 IPR027303 -
Cca01g00441 356 Pfam Glutamine synthetase, catalytic domain 168 346 IPR008146 GO:0004356|GO:0006807
Cca01g00441 356 ProSiteProfiles Glutamine synthetase (GS) catalytic domain profile. 106 356 IPR008146 GO:0004356|GO:0006807
Cca01g00441 356 SUPERFAMILY Glutamine synthetase, N-terminal domain 15 102 IPR036651 GO:0004356|GO:0006542|GO:0006807
Cca01g00441 356 Gene3D - 1 103 IPR036651 GO:0004356|GO:0006542|GO:0006807
Cca01g00441 356 Pfam Glutamine synthetase, beta-Grasp domain 22 97 IPR008147 GO:0004356|GO:0006542|GO:0006807
Cca01g00441 356 ProSitePatterns Glutamine synthetase signature 1. 55 72 IPR027302 -
Cca01g00441 356 SMART Gln_synt_C_2 103 351 IPR008146 GO:0004356|GO:0006807
Cca01g00441 356 PANTHER GLUTAMINE SYNTHETASE 1 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00441 Cca-Chr1 5462859 5467091 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00441 K01915 - gmx:547953 717.613