Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00440 ATGGCCATCCCAGAGGCGAAAGCCATGGAGGAGAACGACGCAGAGGAAGCGAAGCGATTGATGCTGAAAATCGCCGCGATTCTGGACGAGGCTCGAAGTTCCTACGCCACGCACAACCGAAAGCTCAAGGAGCTCTCACTCCTCCGATCCAAAtccccttccccttccctcttcttctccgccttctccAAAATCCTGACTCCTCTCTTCGATTTCCAAAGGCGCCTcgcctccgccgaccgcgtcgtctccttcgtctccaccttcgccgccgtcaccgccgccgacgAATTCCTCGACCACTTCCTCAAGTTCCTCCTCGTAGCCGCCGCCGCATCCAACAAAACCGCCAGGTACCGCGCCTGCCAGATCGTCTCCGAGATAATATTGCGGCTTCCAGATGACGCTGAAGTGAGCAGTGACCTATGGGATGAGGTGATAGAGTGGATGATGGTGAGGGTGCGAGACAAGATTCCTGTGGTGCGTACTTTTGCGGTTAGAGCGCTTTCGCGTTTTGTGAACGACTCTGTGAATAGTGACATCCTTGATTTGTTCCTCGAGATGCTTCCTCTGGAACAGAATGCGGATGTTCGTAAGATGATTGTGTTATCTTTGCCTCCTTCTAGTGCAACTTCTCAAGTTATCATTGATTGTACCTTGGATGTGAGTGAATCTGTACGCAAAGCAGCTTACTGTGTTCTAGCTAATAAATTTCCTCTTCAAAGCTTAAGCATTAAACTTAGGACAGTAATTCTTCGCAGAGGACTTGCTGATCGATCTGTTGCTGTCTCTAAGGAATGTTTTAAACTATTGAAAGATGAGTGGCTTATTAAGTGTTGTAATGGTGATCCTTTAGAACTTCTGAAGTATCTTGATGTTGAAACCTATGAATCAGTGAGCGAGTCTGTCATGGAGGCACTTCTTAAAGCTGGTTTAGTAAAGCTGCAGAATGGTGCAAGTATCCAGCAGTACATATTATCAAATGGTGACAGGACAGAAGGGGACTTGGTTCATTGCCCACCAAGAATTCAGCTAATGGAAGCAGAGGTTTCTCTTTATTGGAGGACTGTTTGCAAGCATTTACAGTCAGAAGCACATGCCAAAGGCTCTGATGCTGCGGCCACAATGGGCACTGAAGCTGAAGTATATGCAGCAGAAGCATCAGATAAAAATGACCTTCTAGAAAAAATTCTTCCTGCAACAGTTGGTGAATATATAGAATTGGTCAGAGCTCATACTAATGCCGGAGCAAATCATCGGTTTGCATCACGGCAGCTGCTTTTGCTTGGTGCTATGTTTGACTTTTCTGATGTTTCAAATAGAAAGGCCGCTGGTGCATTTCTGCATGAGCTTATGTGCAAGCCTCCTGAGCACGAGGATGATAATGAGGGAAATATAGTTGTTCTTGGAGATGGATTAAGTTTTGGTGGAGACAATGAATGGGCTGAAGCCGTAGCAAGTTTAGCAAGGAAAGTTCATGCCACTGCTGGTGAATTTGAAGAAGTTGTTCTTGCAATCATAGAAGAGCTCGCCCAACCTTGCAGGGAGAGAACAGCAAATTATGTGCAGTGGATGCACAGTCTCTCTCTTACTGGTCTTTTTCTCAAAAATACGAAATCGCTGCGCTTTCTTCAGGGCAAGGCTATTGAACCTGATGAGCTACTCCAATCTTTATTACTTCCTGGGGCGAAACAATCTCACTTGGATGTGCAGAGGATTGCTGTCAGATGCCTTGGCCTTTTTGGACTTTTGGAAAGAAAACCAAGTGCCGAACTTTTGAAACAACTGAGAATTTCATATATGAAGGGGCCGCATTCAATCAGTATAGAGTCTTGTAAAGCTTTAATTGATCTTGTGATGTGGCATGGACCTCAAGAAATTGACAAGGCGTTAAAGCTCAATATTCCATGCCAAATGAACAACGAAAAGACGACTTTTTCACCTGTGAACTTTTCTGATTCAGAAGGGGATTTAGATATTGAGACGCTTGATATCTTATTTAGCGGTTTTGAAAATGATGATATGGCGAGTCCTTTACCTAGCAACGAAGATGAGTGCGTTCATGCTATACTTGGGGAGGGCTTTGCTAAAATTCTTCTTTTAAGTGACAACTACCCAAGCATACCGGTTTCTTTGCATCATGTTCTTTTATCAAAACTCATTTACTTGTATTTTAGTGATGTGTCGGAACATCTACACAGGTTGAAGCAATGCTTATCTGTTTTCTTTGAGCTTTACCCATGTCTCTCAGCCAATCATAAGAGGAGCTTAACGAAGAGTTTCATTCCAGTAATGCGTTCAATGTGGCCCGGAATTTTTGGCAATTCTGCGGGTTCTCCTTTTATGGTGTCTCAGATGCGTAAGCGTGCTGTTCAAGCTTCCCGTTTTATGCTGCAGATGGTGCAGATTCCCTTGTACACTAAAGAGACTCAACCAGATTGTGAAGATAGTAGCACGGAACATCCACAAGTCATAGACAGTTCTGCTGAAGTTCCATTTGAATGTTGTGAAGAGGGGCTTGCACTACGCATAGCCGCAGAGGTGGCAAGCTTTCAATCTAAGAAGACAGCTGCTGAGAAGGCATATGTGTCGGCTTTATGCAGAGTGCTTGTTTTGCTTCAGTTTCGGAAATCAGAACAAGGGCCAATAAAATTTATGAGGAGGCTTTTACATCGTGTGATTGAATGTGTGTCCACAGAGAAGGATCTTGTTAAAGAATTGAAACGCATGGCTGATCGTCTCATGACAATAGATGGGCAGCCAGATCAGGAATTGTTGCAAGAAGAAGTAAATCTTATTTTGGGGAAATTGGAACTTGAATGCGACCTTGATTTGGATGCTTCTGTTTCAATGCCACAAACACCAGTTGCACCCCCAGCCAAGCCCGCACGTTCTAGGAGAAGGGTAAGGATTGAGGAAGATAGTTCTGATGAAGGTTCACCTTCTGTGGTTCCTGCTACTCATAATACTGTAAAAAGTCGCACACAGAGAGCAAGCAAAACGGCAGCAATGACCAAGATGTCCTCTGCCTGTCGAACGCTCAAAATTAATGAAATGGAAGACCTAGAAGAAGATTCTGATGTGACATCTGAAGATTCTGATGCATCCGATTAG 3114 0.4249 MAIPEAKAMEENDAEEAKRLMLKIAAILDEARSSYATHNRKLKELSLLRSKSPSPSLFFSAFSKILTPLFDFQRRLASADRVVSFVSTFAAVTAADEFLDHFLKFLLVAAAASNKTARYRACQIVSEIILRLPDDAEVSSDLWDEVIEWMMVRVRDKIPVVRTFAVRALSRFVNDSVNSDILDLFLEMLPLEQNADVRKMIVLSLPPSSATSQVIIDCTLDVSESVRKAAYCVLANKFPLQSLSIKLRTVILRRGLADRSVAVSKECFKLLKDEWLIKCCNGDPLELLKYLDVETYESVSESVMEALLKAGLVKLQNGASIQQYILSNGDRTEGDLVHCPPRIQLMEAEVSLYWRTVCKHLQSEAHAKGSDAAATMGTEAEVYAAEASDKNDLLEKILPATVGEYIELVRAHTNAGANHRFASRQLLLLGAMFDFSDVSNRKAAGAFLHELMCKPPEHEDDNEGNIVVLGDGLSFGGDNEWAEAVASLARKVHATAGEFEEVVLAIIEELAQPCRERTANYVQWMHSLSLTGLFLKNTKSLRFLQGKAIEPDELLQSLLLPGAKQSHLDVQRIAVRCLGLFGLLERKPSAELLKQLRISYMKGPHSISIESCKALIDLVMWHGPQEIDKALKLNIPCQMNNEKTTFSPVNFSDSEGDLDIETLDILFSGFENDDMASPLPSNEDECVHAILGEGFAKILLLSDNYPSIPVSLHHVLLSKLIYLYFSDVSEHLHRLKQCLSVFFELYPCLSANHKRSLTKSFIPVMRSMWPGIFGNSAGSPFMVSQMRKRAVQASRFMLQMVQIPLYTKETQPDCEDSSTEHPQVIDSSAEVPFECCEEGLALRIAAEVASFQSKKTAAEKAYVSALCRVLVLLQFRKSEQGPIKFMRRLLHRVIECVSTEKDLVKELKRMADRLMTIDGQPDQELLQEEVNLILGKLELECDLDLDASVSMPQTPVAPPAKPARSRRRVRIEEDSSDEGSPSVVPATHNTVKSRTQRASKTAAMTKMSSACRTLKINEMEDLEEDSDVTSEDSDASD 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00440 1037 Gene3D - 66 242 IPR011989 -
Cca01g00440 1037 PANTHER CONDENSIN COMPLEX SUBUNIT 3-RELATED 14 1026 IPR027165 GO:0000796|GO:0007076
Cca01g00440 1037 Pfam Nuclear condensing complex subunits, C-term domain 527 875 IPR025977 -
Cca01g00440 1037 MobiDBLite consensus disorder prediction 980 1012 - -
Cca01g00440 1037 PANTHER CONDENSIN COMPLEX SUBUNIT 3 14 1026 - -
Cca01g00440 1037 Coils Coil 28 48 - -
Cca01g00440 1037 MobiDBLite consensus disorder prediction 1020 1037 - -
Cca01g00440 1037 MobiDBLite consensus disorder prediction 949 1037 - -
Cca01g00440 1037 SUPERFAMILY ARM repeat 82 632 IPR016024 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00440 K06678 - gmx:100817677 1745.33