Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00439 ATGGTGGCTGTAGTTTCCCAAGAAAATGTTGTGGCATTGGTTTCTCGTACTGGCAGGGAGTTGCAACGTTATAGAAAAGGTCGTCGCCAAGTTGTGGGATGTATACCATACAGATTCAAGATTGGGGAGAAAACATCGTTGGACGTTTATGATGAATTAGAAGTTCTGGTTATTAGTTCTCAGAAAGGAAAAGGGATGCTATTCCCAAAGGGAGGTTGGGAACTAGATGAATCAAAAAAGGAGGCAGCTTTGAGAGAAACCATAGAGGAAGCTGGGGTTCGAGGCATTGTTGGGGGTAAATTGGGTAAATGGAGTTTCAAGAGTAAGACTCATGACACATTCTATGAAGGGTACATGTTCCCTTTACTTGTTCAAGAGCAATTGGAGTTCTGGCCAGAGCAAAACGTTCGTCAAAGAATATGGATGAGCGTCACAGAAGCAAGGGATGTTTGTCAACACTGGTGGATGAAGGAGGCTCTAGACAGACTCGTAAACCGTCTAATGAGTCAAAAACTTGGTCGTGAGAAGCAAGTTCTTGGTTCTAAAAATGCCAAATCTGACTTGTAA 567 0.4286 MVAVVSQENVVALVSRTGRELQRYRKGRRQVVGCIPYRFKIGEKTSLDVYDELEVLVISSQKGKGMLFPKGGWELDESKKEAALRETIEEAGVRGIVGGKLGKWSFKSKTHDTFYEGYMFPLLVQEQLEFWPEQNVRQRIWMSVTEARDVCQHWWMKEALDRLVNRLMSQKLGREKQVLGSKNAKSDL 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00439 188 ProSitePatterns Nudix box signature. 71 92 IPR020084 GO:0016787
Cca01g00439 188 PANTHER DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE 6 174 - -
Cca01g00439 188 PANTHER NUDIX HYDROLASE-LIKE PROTEIN 6 174 - -
Cca01g00439 188 SUPERFAMILY Nudix 22 167 IPR015797 -
Cca01g00439 188 CDD Nudix_Hydrolase_9 30 157 - -
Cca01g00439 188 Pfam NUDIX domain 49 161 IPR000086 -
Cca01g00439 188 ProSiteProfiles Nudix hydrolase domain profile. 27 164 IPR000086 -
Cca01g00439 188 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 14 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00439 Cca-Chr1 5400185 5402241 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00439 K07766 - gmx:100795999 347.436