Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00430 ATGGAGATAAGTATTACTAGGTCTCATCTTGAAGCACAAGGAATATTCTTTTCAAATATTTCAAGAACGATAGGATGGGAAAGTGCTAAGAAATTTCAATGTAATGTGGCTGCCCAGAGTTCAAGACGGAACATTCACAGAGTGGCCTCTTCCTGTCATGCTTTTACTGCAGTTTATCCTAGAATGCCTTTTATCTGTAGAGTAAATTCTATGCCAGTTAGTTTACAGGAATCTGCATCATATGGAGATAATTCTTTTGAGGATGAGGATCCATCTACAGACTCGGAAGAGGAAACTTTGGCAAAGCCACTTACCTGTGAGCAGATATCGGCACTGCTTGCTGACACTCAGAGATCAAGACTCACTAAGAAGCTTAGTGAAGCCAACCAGCAGAATCGGTTCTTAAAAAGACAGGCTTTGGCCAGACTAGCAGAAGAAATTGCTCAATGTGGTATTCCAGAAGGTTCAAGGAAGATCAATGGAAAGTACATTCATTCTCACCTTGTTGCCAGATTAGAAGCTGTACGTGGACAACTGAAGGGACAAATTAAGGATGTTGAAGTGGCACAATCGAAGGAGGTTTCTGTGTTTTGGGTTGGCATGGCTGAGAGCGTGCAAATTATGGGCACCTTTGATGGCTGGAGCCAGGGGGAGCACCTTTCACCCGAGTATACCGGTTCTTTCACAAGGTTTTCAACAACATTGATGCTCAGGCCAGGAAGGTACGAGATCAAATTCTTGGTAGATGGTGAATGGCAACTGTCACCAGAGTTTCCCGTTATTGGGGAAGGATTAACGAAAAATAATTTGTTAGTTGTTGAGTAA 825 0.4255 MEISITRSHLEAQGIFFSNISRTIGWESAKKFQCNVAAQSSRRNIHRVASSCHAFTAVYPRMPFICRVNSMPVSLQESASYGDNSFEDEDPSTDSEEETLAKPLTCEQISALLADTQRSRLTKKLSEANQQNRFLKRQALARLAEEIAQCGIPEGSRKINGKYIHSHLVARLEAVRGQLKGQIKDVEVAQSKEVSVFWVGMAESVQIMGTFDGWSQGEHLSPEYTGSFTRFSTTLMLRPGRYEIKFLVDGEWQLSPEFPVIGEGLTKNNLLVVE 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00430 274 Pfam Glycogen recognition site of AMP-activated protein kinase 195 271 IPR032640 -
Cca01g00430 274 Gene3D Immunoglobulins 184 273 IPR013783 -
Cca01g00430 274 Coils Coil 118 138 - -
Cca01g00430 274 PANTHER PROTEIN PTST, CHLOROPLASTIC 138 274 - -
Cca01g00430 274 PANTHER PROTEIN PTST, CHLOROPLASTIC 3 138 - -
Cca01g00430 274 MobiDBLite consensus disorder prediction 79 100 - -
Cca01g00430 274 CDD E_set_AMPKbeta_like_N 193 273 - -
Cca01g00430 274 SUPERFAMILY E set domains 194 273 IPR014756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00430 Cca-Chr1 5217395 5224939 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00430 - - gmx:100806282 459.529