Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00425 ATGGCGGAAAGCCCTTTCCGTAGCAGAAAGCGAAGCCACCGTTCTTCTCCTTCTCCAccgaagccgaagccgaagccgaagccCCGCCCCGACTTCCCTTCGTTCCAAGACATCCCCAATCTCCCTTCCAACGTCAAATCCCTCTGCCACCTCATTgccaccacccccgccgccgccttggaagcttccctccgctccgccgccatcgccgtctccccctccgacgTGGAGCAGGTCCTGAAGCTCTCGTACGGCTTCCCCGGGCAGGCCGTGAAGTTCTTCCGGTGGTCGGGCCACCAGCTCCGGCACAGGCACACCCCTTACTCGTGGAACCTGGTGGTGGACCTCCTCGGCAAGAACCTCTTCTTCGACGCCATGTGGGACGCCATCAAGTCGATGCACACCGAGCGGCTCCTCTCCCTGGCCACCTTCGCCTCCGTCTTCGGCAGCTACGTGGCCTCCGATCGCACCGCGGAAGCCCTGGCCGCCTTCGAGGCCATGGAGAATTACGGCCTCCACAGAGACACTGTCGCATTGAATTCCTTGTTTAGTGCTATTTGTAAGGATGGTAGGACTGTTGATGCTTCTGACTATTTGCAGGTTGCCAAGAACTTTGTTCGCCCCGACGCCGATACCTACGCCATTTTGATGGAGGGTTGGGAGAAGGAGATGAGTGTTGTTGGTGCCAAGGAGACATTTGCTGAGATGGTCATTGAAATTGGATGGGATCCTGCCAATGTGGCTGCCTATGATTCCTTCCTTTGCACGCTTGTTCGTGGCCGTGATGGATTGCTTGAGGCCATTAAGTTTGTTGATTCAATGAGAGATAGGAGGTGTTACCCTGGTGTCAGGTTCTTGAAGGCTGCATTGGATGAGTGTCTTCAGAGTCATGATGTGAGGACTGCTCAGTTTTTCTGGGAGGTTTTGGTGGTGGGGAAGGTCGTGCAGCCCACCACTGAGATGTACAATTTGATGATTGTGTTGCATTGCTACCAGAGCGATACCGAGGCTGCCAGGAGGTTGCTTGATGAGATGGTTTACCAAGGGGTTTTTCCGGATACCATGAGTTATAACATGTTGTTTCAGTTCTTGATCAAGGGCAGGAAGTTGAGGGAGGCTTCCACTGTGTTTGCTGAGATGGTGAAGAATGAGTGTGTGCCGGAGCAGGCTAATTGCGCTGCAGCAGTTAAGGTTTATGTGGATAATGGGGATGCTTTTATGGCGATGAAGGTTTGGAGGTGTATGGTGGAGAATTACGGGAAGGATTTGGAGCGGACAGCGAATTTTCTGGTGGTGGGGCTTCGCGATTTGAATAGGGTTCCGGAGGCAGTCAAGTATGCTGAGGATATGATTAGAAGGGGAATCAGGTTGTCCTCTGCCACATTGTCCAAGCTGAGACAGAGCCTTGTTAAAGACAGAAAAGAATCTGTGTATGAAGAGCTTTTGAGAAAGTGGAAAGCTAATTAG 1467 0.4847 MAESPFRSRKRSHRSSPSPPKPKPKPKPRPDFPSFQDIPNLPSNVKSLCHLIATTPAAALEASLRSAAIAVSPSDVEQVLKLSYGFPGQAVKFFRWSGHQLRHRHTPYSWNLVVDLLGKNLFFDAMWDAIKSMHTERLLSLATFASVFGSYVASDRTAEALAAFEAMENYGLHRDTVALNSLFSAICKDGRTVDASDYLQVAKNFVRPDADTYAILMEGWEKEMSVVGAKETFAEMVIEIGWDPANVAAYDSFLCTLVRGRDGLLEAIKFVDSMRDRRCYPGVRFLKAALDECLQSHDVRTAQFFWEVLVVGKVVQPTTEMYNLMIVLHCYQSDTEAARRLLDEMVYQGVFPDTMSYNMLFQFLIKGRKLREASTVFAEMVKNECVPEQANCAAAVKVYVDNGDAFMAMKVWRCMVENYGKDLERTANFLVVGLRDLNRVPEAVKYAEDMIRRGIRLSSATLSKLRQSLVKDRKESVYEELLRKWKAN 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00425 488 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 353 387 IPR002885 -
Cca01g00425 488 MobiDBLite consensus disorder prediction 1 36 - -
Cca01g00425 488 TIGRFAM PPR: pentatricopeptide repeat domain 321 354 IPR002885 -
Cca01g00425 488 TIGRFAM PPR: pentatricopeptide repeat domain 356 387 IPR002885 -
Cca01g00425 488 Gene3D Tetratricopeptide repeat domain 310 488 IPR011990 GO:0005515
Cca01g00425 488 Gene3D Tetratricopeptide repeat domain 197 305 IPR011990 GO:0005515
Cca01g00425 488 Gene3D Tetratricopeptide repeat domain 70 196 IPR011990 GO:0005515
Cca01g00425 488 PANTHER OS02G0711100 PROTEIN 8 487 - -
Cca01g00425 488 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 8 487 - -
Cca01g00425 488 Pfam PPR repeat family 317 364 IPR002885 -
Cca01g00425 488 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 318 352 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00425 Cca-Chr1 5117970 5119826 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00425 306 486 Glycosyltransferase AT1G05670 27.273 4.36e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00425 - - pvu:PHAVU_001G231300g 736.487