Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00420 ATGGGAGATCCAGTGGAGCGATTGGGATCGGAGGCTTTGGACTCCGCCGCCGCCGTCAAGACCGACGACCTTTGCATGGAAATCGATCCGCCATTTCAGGAAAACGTCGCCACTGCCGAGGACTGGCGCAAAGCCCTCAACAAAGTCGTCCCCGCCGTCGTCGTCCTCCGGACCACCGCCACTCGCTCCTTCGACACCGAGTCCGCCGGCTCCAGCTACGCCACCGGCTTCATCGTCGACAAGCGCCGCGGTATCATTCTCACCAATCGCCACGTTGTCAAGCCAGGTCCCGTGGTCGCAGAAGCCATGTTTTTGAACCGCGAAGAGGTTCCGGTGCATCCGATTTACAGAGATCCGGTACATGATTTTGGGTTCTTTCGTTATGATCCTGGCGCTATACAATTTCTGAACTACGAGGAGATACCCCTTGCTCCTGAAGCTGCTTGTGTTGGACTAGAAATTAGAGTTGTTGGTAATGATAGTGGTGAGAAGGTTTCCATTTTGGCTGGTACTCTTGCTCGTTTGGATAGGGACGCTCCTCATTATTCGAAGGATGGGTATAACGACTTCAACACATTCTACATGCAAGCAGCATCTGGGACTAAAGGAGGGTCAAGTGGTTCCCCAGTTATAGATTGGCAAGGCAGGGCAGTGGCTCTGAATGCTGGGAGCAAGTCATCAAGTGCATCAGCATTCTTTCTACCTCTAGAACGAGTTGTGAGGGCATTAAGGTTTCTTCAAAAGGGAAGTGAAACTTTTGTTGATAAATGGAAGGCAGTTTCTATACCCCGTGGTACGCTTCAGGTGACATTTCTCCATAAAGGGTTTGATGAGACTCGTCGGCTTGGCCTCAAAAGTGAGACAGAACAGATAGTACGTCATGCTTCTCCAGCTGGTGAAACTGGAATGCTCGTTGTGGACTCTGTGGTGCCAGGTGGTCCGGGTTATAAAAATTTGGAACCAGGTGATGTACTTGTTCGTGTCAATGGAGAAGTCATTACTCAATTCCTGAAACTGGAGACTCTACTTGATGACAGTGTAAACAAGAATATTGAATTACAAATTGAAAGGGGTGGCACATCAAAGAGTTTAACTTTGTTGGTACAAGATTTGCATTCAATAACGCCTGATTATTTCTTTGAAGTGAGTGGGGCAGTAATACATCCGCTTTCTTATCAGCAGGCTAGAAACTTCCGATTCCATTGTGGTCTTGTTTATGTGGCTCAACCAGGATACATGCTCTTCAGAGCAGTAGTTCCTCGCCATTCAATAATTAAGAAATTTGCTGGTGAAGAAATATCTTGTATTGAGGAACTAATATCAGTTCTCTCTAAGCTATCTAGAGGTGCTCGAGTACCATTGGAATATATAAGCTACATGGATCGTCATCGAAGGAAGTCTGTGTTGGTGACGGTTGATCGGCATGAATGGTATGCACCTCCCCAGATATACACTCGTGATGACAGTACTGGCCTATGGATTGCTAAGCCTGCTTTTCAGCATGATTCTCCCTTTCTATCATCTGGTGTTAAAGATGTTGAAAATCTTCCTGCACAGCCAGTTTCATTAACTAGTGAGCATGCTTGTCGGGGACATGTGTGTGAAGATAGCAATCTGGAGTTGGTTGATGGTGTCACTAGCATGGAAACCAATTGTGAAGATCACTCAGAGTGTGTAGCTCACAACAATGCATCTGATGGTGTGGTGAAAAAACGAAGAGTGGAAGAAGATTTATCAGCTGATGGAAATGTTGTTGCTGATTTTTCCTTAAATGATAACCGGGAAGCTAAACTAGAAAAATCAAGTGTTATACAGGATGACATGTTACTGGACTATCAGGGTGCAACTGCAGCTGCAGCAAATGCATCAGTTGCTGAACGTGTGATCGAGCCTACTCTTGTGATGTTTGAGgttcatgttcccccatcttgtatgctagatggtgttcactcacagcacttttttggaactggtgtcataatatatcactcccaagatatgggattagttgcagttgacaaaaatacagttgcaatatccgcctctgatgtagtactatcctttgctgcctttccagttgaaattccaggagaggtggtatttctccatcctgttcacaattatgctctcatatcatatgatccctctgcattgggacctgttggtggctcagttgttcgtgctgcagagttacttccagAGCCAGCATTGTGCCGGGGGGATTCTGTTTACCTTGTGGGGTTGAGTAGAAGCCTTCAAGCAACTTCTAGAAAATCAGTTGTTACCAATCCCTGTGCTGCATTAAATATAGGATCTGCTGATTCCCCTCGCTATAGAGCAACCAATATGGAAGTAATTGAGCTTGATACAGATTTTGGCAGTACATTTTCGGGTGTGCTAACAGATGAACAAGGAAGGGTCCGAGCTATATGGGGAAGCTTCTCAACTCAGCTGAAATTTGGTTGCAGTACCTCAGAAGATCATCAATTTGTGAGGGGTATTCCAATTTATGCAATAAGTCAGGTCCTTGACAAGATTGTGTCTGGAGCAAATGGGCCTCCTCTTCTGATAAATGGTGTCAAAAGGCCTATGCCACTTGTGAGAATTTTAGAGGTTGAGCTTTATCCAACATTGCTTTCAAAGGCTCGGAGTTTTGGATTAAGTGATGATTGGATTCAGGCACTTGTTAAGAAAGATCCAGTAAGACGACAGGTTTTACGTGTTAAAGGTTGTTTGGCTGGATCAAAGGCTGAGAATCTTTTAGAACAAGGGGACATGGTTTTAGCAATCAATAAAGAACCAGTCACATGCTTCCGTGACATTGAAAATGCTTGCCAAGCTTTAGACAAATCTAACGACAATGATGGGAAGCTTCACTTGACTATTTTCCGACAGGGACGAGAGGTTGAACTTTTTGTGGGAACAGATGTAAGGGATGGAAATGGCACTACTCGTGCAATTAATTGGTGTGGCTGTATTGTTCAAGATCCACATTCTGCAGTACGTGCTCTTGGATTTCTTCCTGAAGAAGGTCATGGTGTATATGTGGCAAGGTGGTGTCATGGGAGTCCTGTTCACAGATATGGTCTATACGCCCTTCAGTGGATAGTTGAAATTAATGGAAAACCAACGCCAAATCTAGATTCTTTCCTTGAGGTGACAAAGGAACTGGAACATGGGGAGTTTGTTCGTGTAAGGACAATTCACCTAAATGGGAAGCCACGAGTCCTAACATTGAAGCAAGATTTGCATTACTGGCCTACGTGGGAATTGAGATTTGATCCAAATACTGCGTTGTGGCATCGCAATATAATCAAGGGATTGAACTGCAGGACTGTATGA 3342 0.4108 MGDPVERLGSEALDSAAAVKTDDLCMEIDPPFQENVATAEDWRKALNKVVPAVVVLRTTATRSFDTESAGSSYATGFIVDKRRGIILTNRHVVKPGPVVAEAMFLNREEVPVHPIYRDPVHDFGFFRYDPGAIQFLNYEEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYSKDGYNDFNTFYMQAASGTKGGSSGSPVIDWQGRAVALNAGSKSSSASAFFLPLERVVRALRFLQKGSETFVDKWKAVSIPRGTLQVTFLHKGFDETRRLGLKSETEQIVRHASPAGETGMLVVDSVVPGGPGYKNLEPGDVLVRVNGEVITQFLKLETLLDDSVNKNIELQIERGGTSKSLTLLVQDLHSITPDYFFEVSGAVIHPLSYQQARNFRFHCGLVYVAQPGYMLFRAVVPRHSIIKKFAGEEISCIEELISVLSKLSRGARVPLEYISYMDRHRRKSVLVTVDRHEWYAPPQIYTRDDSTGLWIAKPAFQHDSPFLSSGVKDVENLPAQPVSLTSEHACRGHVCEDSNLELVDGVTSMETNCEDHSECVAHNNASDGVVKKRRVEEDLSADGNVVADFSLNDNREAKLEKSSVIQDDMLLDYQGATAAAANASVAERVIEPTLVMFEVHVPPSCMLDGVHSQHFFGTGVIIYHSQDMGLVAVDKNTVAISASDVVLSFAAFPVEIPGEVVFLHPVHNYALISYDPSALGPVGGSVVRAAELLPEPALCRGDSVYLVGLSRSLQATSRKSVVTNPCAALNIGSADSPRYRATNMEVIELDTDFGSTFSGVLTDEQGRVRAIWGSFSTQLKFGCSTSEDHQFVRGIPIYAISQVLDKIVSGANGPPLLINGVKRPMPLVRILEVELYPTLLSKARSFGLSDDWIQALVKKDPVRRQVLRVKGCLAGSKAENLLEQGDMVLAINKEPVTCFRDIENACQALDKSNDNDGKLHLTIFRQGREVELFVGTDVRDGNGTTRAINWCGCIVQDPHSAVRALGFLPEEGHGVYVARWCHGSPVHRYGLYALQWIVEINGKPTPNLDSFLEVTKELEHGEFVRVRTIHLNGKPRVLTLKQDLHYWPTWELRFDPNTALWHRNIIKGLNCRTV 1113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00420 1113 Gene3D - 905 978 IPR036034 GO:0005515
Cca01g00420 1113 Gene3D - 986 1084 IPR036034 GO:0005515
Cca01g00420 1113 SUPERFAMILY Trypsin-like serine proteases 40 244 IPR009003 -
Cca01g00420 1113 ProSiteProfiles PDZ domain profile. 269 333 IPR001478 GO:0005515
Cca01g00420 1113 SUPERFAMILY PDZ domain-like 1011 1096 IPR036034 GO:0005515
Cca01g00420 1113 Pfam PDZ domain 305 357 IPR041489 -
Cca01g00420 1113 SUPERFAMILY PDZ domain-like 907 1009 IPR036034 GO:0005515
Cca01g00420 1113 PANTHER PROTEASE DO-LIKE 7 21 1108 - -
Cca01g00420 1113 Pfam PDZ-like domain 373 446 IPR025926 -
Cca01g00420 1113 Pfam PDZ-like domain 983 1059 IPR025926 -
Cca01g00420 1113 PANTHER PRO-APOPTOTIC SERINE PROTEASE NMA111 21 1108 - -
Cca01g00420 1113 PRINTS HtrA/DegQ protease family signature 84 96 IPR001940 GO:0004252|GO:0006508
Cca01g00420 1113 PRINTS HtrA/DegQ protease family signature 150 174 IPR001940 GO:0004252|GO:0006508
Cca01g00420 1113 PRINTS HtrA/DegQ protease family signature 191 208 IPR001940 GO:0004252|GO:0006508
Cca01g00420 1113 PRINTS HtrA/DegQ protease family signature 213 230 IPR001940 GO:0004252|GO:0006508
Cca01g00420 1113 PRINTS HtrA/DegQ protease family signature 318 330 IPR001940 GO:0004252|GO:0006508
Cca01g00420 1113 SUPERFAMILY Trypsin-like serine proteases 632 845 IPR009003 -
Cca01g00420 1113 SMART pdz_new 1002 1071 IPR001478 GO:0005515
Cca01g00420 1113 SMART pdz_new 881 966 IPR001478 GO:0005515
Cca01g00420 1113 SMART pdz_new 280 359 IPR001478 GO:0005515
Cca01g00420 1113 CDD PDZ_serine_protease 280 366 - -
Cca01g00420 1113 Pfam Peptidase family M50 260 375 IPR008915 GO:0004222|GO:0006508
Cca01g00420 1113 SUPERFAMILY PDZ domain-like 304 403 IPR036034 GO:0005515
Cca01g00420 1113 Gene3D - 29 139 IPR043504 -
Cca01g00420 1113 Gene3D - 279 372 IPR036034 GO:0005515
Cca01g00420 1113 Gene3D - 146 255 IPR043504 -
Cca01g00420 1113 Pfam Trypsin-like peptidase domain 74 220 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00420 K22686 - gmx:100809144 2107.03