Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00419 ATGGCTTCTCCAACACTTAGTTTGGCGCCTCAAAAGCCTACAATAGTTTTGTTCCTTATATGCATTTCATTTTCATATTCAGTTCAAGAAGGCATAACATCTTCTAAGAAGTTAGAGTTAGACCAACCAGTGTTTGCCCCACCAACAGACACTGAAATAAAGTGTGGATCATGTCCTTGTGGAAGCACCTGTGGTGAGCAACTGccaccacctccaccacctccttgtgcaccgccaccgccgccgttaccatcaccaccaccgccgccaccaccatcaccaccgccaccgccaAAGTATCCCTCTTGTCCACAGAATTGCAACCCCTTAATGCCACCACCACCACCAAGGTTCATATATGTGCCTGTGCCAGGTGTACCTAAACCATATACTTGGGTATATTATTACTCTGGTGCTGAAAGCAGAGATGTGGGATTGCTTGTTTTAGCTGGTTTGGGAGGACTCTCGATGGCAACACTATTTTGGATGACATCATGA 498 0.3514 MASPTLSLAPQKPTIVLFLICISFSYSVQEGITSSKKLELDQPVFAPPTDTEIKCGSCPCGSTCGEQLPPPPPPPCAPPPPPLPSPPPPPPPSPPPPPKYPSCPQNCNPLMPPPPPRFIYVPVPGVPKPYTWVYYYSGAESRDVGLLVLAGLGGLSMATLFWMTS 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00419 165 MobiDBLite consensus disorder prediction 66 106 - -
Cca01g00419 165 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 2 1 162 - -
Cca01g00419 165 PRINTS Proline rich extensin signature 84 101 - -
Cca01g00419 165 PRINTS Proline rich extensin signature 1 13 - -
Cca01g00419 165 PRINTS Proline rich extensin signature 67 83 - -
Cca01g00419 165 PRINTS Proline rich extensin signature 104 129 - -
Cca01g00419 165 PANTHER PROTEIN, PUTATIVE-RELATED 1 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00419 Cca-Chr1 5012548 5013484 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00419 - - gmx:102666273 185.652