Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00409 ATGGTGTTGAAGAAGAGGGTTGATTATAGATTTAAAGGCTTTCGAGTCCCAGTTATACCTAAAGCTCCTAGATCTGCAAGAAGGAGGGGTTCTTTCAACAAAGATGATGATGGTCGAGCCTGTGCTATTGAACTACTGGCTTCTTTAGCTGGGCAGTTGTTGCAGGAGAGTGAAAGTTCTGCTTCCAGCAATGCATCTGAAGGAAATCATCAGCCTGCATTTAGCCACGGTGTCATTGGGCAAGATAGACAGGATGAAGTGAAACCATTAAAAACCGAGGAAGTTCATCAGGGAAGTTGTGCAGAGAGTACTTTTAAGACTGAGGTAGCCTCACAAAACAGTAGTCGGAAATCTGTTTCACATGCCAAGACTGATTGTTTGCTAGAGCACGTTTCAGTTAATACTAATTCTGACTGTCGGAAGAAAGTTGAAGCTGATGTTAAGACTGAAATTTCCGATTGTGATAATAAGTTTGGACATTATTCTGATAGGTTAGTAGAAACACCTGAAAACTTTAGGGAGTCTAGCGATGGTAACATAAAGAAAGGATTTAAATGGGAACAGGAGGTCGGCAGTTCATGCTTTCGGGAATCAACTTTGGCTGATAAATGTAGTTTGAAGGAGCACTTAGAATTGTATGTATCTCCTACACTAATTGACTCAAAAAGTAATCTTAAGTCTCCATTTCATAGGAAATCTTTTCCCAGTGCATCCTTTTCCAGGCATGGGAATGGTAGTAAGTTAGGTTTTAGAGATGATGACGAAAACTTTTTAAGGTGCAAAAAAGCTTGCACGAAATCAAAGGCTTTTAGGTCTCCACGACGCATTGCACACCGAAGAATCAGGAATTTGATGTCTTCCAAATACTGGAAGACAGCTCCAAAGTTGAAGGACTGCGAACTTTCTAGATCCGATTTAGGAGTACCAAATTATCATAAGAGGAAGACTTGTTATGGTGTTGAAAGGTCTCAGCTTAACACCATTGTTAAAAGGAGGAAATTCTTTGACAGAGTTTCAGGGGTAACTTCTGATGGAGGATTTAGCAGTGAGAGTGTGTCCAATTCACCTCAGAAAGGGACAGATAGAGACAAGCCTAGCTCATCTGCAAAACTTCATGTATCTAAGGCCAAGGATTCTCATGTGAAGTTTAGCATTAAGTCAATAAGGATACCAGAGCTTTATATTGAGGTTCCTGAAACTGCAACTGTTGGTTCACTAAAGAGGAGAATCATGGAGGCAGTGATGGCTATAGTTGGAGGTGGTGCGCATGTTGGTGTTCTTCTTCAGGGGAAAAAAGTTAGAGATGACAATAGAACACTTGTGCAGACTGGTATATCTTGCAATGAAAATTTGGATAGCCTCAGTTTCATGTTGGAGCCCACTTCTCTACAAGCTTCTCCAATTTTGTGTGTTGGTGATCCTTGTTCTCAATGTGAAACATCTCAGCCTACCAGGCCCACAGAAACTCCTGTCTTAGATTCAGGGATTACAGATACTTTACATGACTCACCCTTGCTGACATATCCGGGCAACCTAATTGAAAGTAACCACGAGTTTACTTCTTCACCCGCCGACACTACAGTTGACAACATAACACCTGATTCCAGAGCACTAGTTGCTGTTCCAGCTATCACAGAAGCATTAGCTGTGGTTCCTGTGAGTCAGAAAACCAAGCGCTCTGACTTTGCACAGCGTCGAACCAGGAGACCATTCTCTGTGGCTGAGGTAGAAGCACTCGTTCATGCAGTTGAGGAACTAGGAACTGGGAGGTACGATGTTATCAATAAATCAGCTTTACCTGCAGATAGTTGTAGATCATACGTCGACCAATGA 1833 0.4195 MVLKKRVDYRFKGFRVPVIPKAPRSARRRGSFNKDDDGRACAIELLASLAGQLLQESESSASSNASEGNHQPAFSHGVIGQDRQDEVKPLKTEEVHQGSCAESTFKTEVASQNSSRKSVSHAKTDCLLEHVSVNTNSDCRKKVEADVKTEISDCDNKFGHYSDRLVETPENFRESSDGNIKKGFKWEQEVGSSCFRESTLADKCSLKEHLELYVSPTLIDSKSNLKSPFHRKSFPSASFSRHGNGSKLGFRDDDENFLRCKKACTKSKAFRSPRRIAHRRIRNLMSSKYWKTAPKLKDCELSRSDLGVPNYHKRKTCYGVERSQLNTIVKRRKFFDRVSGVTSDGGFSSESVSNSPQKGTDRDKPSSSAKLHVSKAKDSHVKFSIKSIRIPELYIEVPETATVGSLKRRIMEAVMAIVGGGAHVGVLLQGKKVRDDNRTLVQTGISCNENLDSLSFMLEPTSLQASPILCVGDPCSQCETSQPTRPTETPVLDSGITDTLHDSPLLTYPGNLIESNHEFTSSPADTTVDNITPDSRALVAVPAITEALAVVPVSQKTKRSDFAQRRTRRPFSVAEVEALVHAVEELGTGRYDVINKSALPADSCRSYVDQ 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00409 610 MobiDBLite consensus disorder prediction 97 116 - -
Cca01g00409 610 MobiDBLite consensus disorder prediction 342 362 - -
Cca01g00409 610 SUPERFAMILY Ubiquitin-like 377 451 IPR029071 -
Cca01g00409 610 MobiDBLite consensus disorder prediction 56 71 - -
Cca01g00409 610 MobiDBLite consensus disorder prediction 56 116 - -
Cca01g00409 610 MobiDBLite consensus disorder prediction 81 95 - -
Cca01g00409 610 Gene3D - 556 610 - -
Cca01g00409 610 PANTHER TELOMERIC REPEAT BINDING PROTEIN 1 609 IPR031105 -
Cca01g00409 610 PANTHER TELOMERE-BINDING PROTEIN, PUTATIVE-RELATED 1 609 - -
Cca01g00409 610 MobiDBLite consensus disorder prediction 342 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00409 Cca-Chr1 4838105 4843269 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00409 - - gmx:100795471 958.362