Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00408 ATGGAGTCCCCAGGAGCCAGAAAAAGCGGTTTGAAGCTCCCAGCTGGGATGTCAGGAGGCACGCTGCGGCTGGACACAACGAAAGcagcatcagcatcagcatcagcatcagcatcagcatcagcatcagcatcagcatcagcatcagcatcagcatcagcatcagcatcagcatcagcatcagcatcagcatcagcatcagcttcagcTTCGTTTCGTTCGATTTCGAGCATTACTTCCCCTTCTTCCTTCCGGTCCATCTCCAACCTGACATCCCCTTCGAAAGCGAACTCGTCGACGTGCAGCGACAGGTTCATTCCGTGCAGGTCGTCGTCGCGGCTCCACACGTTCGGGCTGGTGGAGAAGGGCTCGCCGGCGAAGGAAGGGGCCAACGAGGCCTACTCCAGGCTTCTCAGATCGGAGCTCTTTGGTCCTGACTTTGTTTCTCCTTCTTCGCCTGCAGCTGCTCCCCACTCCCCCATCAGTCCCACCAAGAACATGCTCCGCTTCAGAACCGATCACTCCGCCCCACCCTCTTCGCCCTACTCTCCCTCCGTTTTGGGGCCGCACAATGCTTTTGCTTCTGACTCTTCTACCCCGCCTCCCAAACCTCCTAGGAAAGTTCCCAAGACACCCCACAAGGTTTTGGATGCTCCATCACTTCAAGATGACTTTTACTTGAATCTGGTGGACTGGTCCTCACAAAATGTTCTTGCTGTGGGGCTAGGCACTTGTGTTTATCTGTGGAGTGCTTCAAACAGCAAAGTGACTAAGCTATGTGACTTGGGGCCTTATGATGGAGTCTGTTCTGTTCAGTGGACACGGGAGGGTTCTTTTATATCAATTGGTACAAATCTTGGTCAAGTCCAGATTTGGGATGGAACACAGTGTAAGAAGGTCAGAACCATGGGTGGGCATCAGACAAGAACTGGTGTTTTGGCATGGAACTCTCGCACTTTGGCTTCTGGGAGCAGAGATAGGAACATACTTCAGCATGACATGAGGGTTTCAAGTGACTTTGTTAGCAAGCTTGTAGGCCACAAGTCTGAGGTGTGTGGATTGAAATGGTCATGTGATGACAGGGAACTTGCTTCTGGTGGTAATGATAATCAGCTTCTGGTATGGAATCAGCACTCTCAGCAACCAGCTTTGAGACTCACCGAGCACACTGCTGCTGTGAAGGCCATTGCTTGGTCACCTCATCAAAGTGGCCTCCTTGTGTCTGGAGGTGGAACTGCTGATAGGTGTATTCGTTTTTGGAACACTACAAATGGCCATCAATTGAACAGTGTTGACACTGGGAGCCAGGTATGCAACCTTGCTTGGAGTAAAAATGTGAATGAGCTAGTAAGTACTCATGGCTACTCCCAAAATCAGATCATGGTGTGGAAATATCCATCATTGGCAAAGGTTGCAACTCTAACTGGCCACAGCATGAGAGTGCTGTACCTTGCAATGTCTCCCGATGGACAGACTATAGTAACGGGTGCTGGGGATGAGACTCTTAGGTTTTGGAATGTTTTCCCATCAATGAAAGCACCTGCCCCGGTTAAGGATACAGGCCTTTGGTCATTGGGGCGCACTCAAATTCGATGA 1596 0.4668 MESPGARKSGLKLPAGMSGGTLRLDTTKAASASASASASASASASASASASASASASASASASASASASASFRSISSITSPSSFRSISNLTSPSKANSSTCSDRFIPCRSSSRLHTFGLVEKGSPAKEGANEAYSRLLRSELFGPDFVSPSSPAAAPHSPISPTKNMLRFRTDHSAPPSSPYSPSVLGPHNAFASDSSTPPPKPPRKVPKTPHKVLDAPSLQDDFYLNLVDWSSQNVLAVGLGTCVYLWSASNSKVTKLCDLGPYDGVCSVQWTREGSFISIGTNLGQVQIWDGTQCKKVRTMGGHQTRTGVLAWNSRTLASGSRDRNILQHDMRVSSDFVSKLVGHKSEVCGLKWSCDDRELASGGNDNQLLVWNQHSQQPALRLTEHTAAVKAIAWSPHQSGLLVSGGGTADRCIRFWNTTNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSLAKVATLTGHSMRVLYLAMSPDGQTIVTGAGDETLRFWNVFPSMKAPAPVKDTGLWSLGRTQIR 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00408 531 SUPERFAMILY WD40 repeat-like 206 507 IPR036322 GO:0005515
Cca01g00408 531 ProSiteProfiles Trp-Asp (WD) repeats profile. 386 430 IPR001680 GO:0005515
Cca01g00408 531 SMART WD40_4 379 421 IPR001680 GO:0005515
Cca01g00408 531 SMART WD40_4 296 333 IPR001680 GO:0005515
Cca01g00408 531 SMART WD40_4 424 464 IPR001680 GO:0005515
Cca01g00408 531 SMART WD40_4 253 293 IPR001680 GO:0005515
Cca01g00408 531 SMART WD40_4 337 376 IPR001680 GO:0005515
Cca01g00408 531 SMART WD40_4 209 250 IPR001680 GO:0005515
Cca01g00408 531 SMART WD40_4 467 506 IPR001680 GO:0005515
Cca01g00408 531 Gene3D - 168 508 IPR015943 GO:0005515
Cca01g00408 531 ProSiteProfiles Trp-Asp (WD) repeats profile. 344 385 IPR001680 GO:0005515
Cca01g00408 531 MobiDBLite consensus disorder prediction 149 213 - -
Cca01g00408 531 ProSiteProfiles Trp-Asp (WD) repeats profile. 474 507 IPR001680 GO:0005515
Cca01g00408 531 ProSitePatterns Trp-Asp (WD) repeats signature. 493 507 IPR019775 -
Cca01g00408 531 ProSitePatterns Trp-Asp (WD) repeats signature. 408 422 IPR019775 -
Cca01g00408 531 Pfam Eukaryotic translation initiation factor eIF2A 369 504 IPR013979 -
Cca01g00408 531 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 344 376 - -
Cca01g00408 531 MobiDBLite consensus disorder prediction 1 26 - -
Cca01g00408 531 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 67 531 IPR033010 GO:0010997|GO:0097027|GO:1904668
Cca01g00408 531 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 474 507 - -
Cca01g00408 531 PANTHER PROTEIN FIZZY-RELATED 3 67 531 - -
Cca01g00408 531 MobiDBLite consensus disorder prediction 68 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00408 Cca-Chr1 4831348 4835106 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00408 341 507 Miscellaneous Gene Families AT5G08390 21.429 4.35e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00408 K03364 - gmx:547741 854.744