Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00401 ATGTGTACAATATTAAATTTAAAAAGTGATGGGTTGCAACCCAATAAAGAAAAGTTAACCGAAAAAGCCCAAAGGAAAGGGGTAGTGGCCCTGGTAGAGGTTGAGGACAACATTTCGGAATTATCACATGGGTATGGTGGTGGGCTCATGTATTGGGTAAAATCCAAGAAAAGGTGGGACCAAAAGCAAACCAAGAAGAAGAAAGAGGAAGAAATTGACTGTGCTGTTAAACAAAAAAAGGTTGTCATTGTCACTGTCAATGCAGAGACACTCAGACACCGCGCACGCACGCTCACATACCAACCTGCTTTGCTTTGGAAAAGAGTTTCATCAAACGCATGGCCACCCCAAATTCGCCGCTTTCATCAGTTACGCCATTCACTCGCTTCGTTCCGCCCTTCACCTGAAAAAAGGAGTGCCACCATGGGTGATGCAATTGATTTGTCTGGTGATGGAGGAGTCATCAAGACCGTTGTGAGAAAAAGCAAAGCTGATGCTGTTGGTCCAACAGAAAACTTTCCTCTCGTTGATGTTCATTATGAAGGCACACTTGCTGATACTGGTGAAGTTTTTGACACTACGCATGAAGATAACACTGTCTTCTCTTTTGAGGTTGGAAAAGGAAGTGTTATCAAGGCTTGGGAAATTGCAGTGAAAACCATGAAGGTTGGAGAAGTTGCAAAAATAACTTGCAAACCAGAATATGCATATGGCAGTGCAGGATCTCCTCCAGATATTCCTCCAGATGCAACCCTTGTTTTTGAAGTTGAGCTAGTTGCCTGTCGGCCAAGGAAGGGCTCCAGTCTGGGAAGTGTTTCAGAGGAGAGGGCTAGGCTAGACGAGCTGAAGAAGCAGAGAGAGCTAGCTGCTGCTGCCAAAGAGGAGGAGAAGAAGAAGAGGGAAGAGGCAAAAGCAGCTGCTGCTGCACGTGTGCAAGCCAAGTTAGATGCCAAgaaaggtcaaggaaagggtaaaggtaaagcgaaaTAG 990 0.4384 MCTILNLKSDGLQPNKEKLTEKAQRKGVVALVEVEDNISELSHGYGGGLMYWVKSKKRWDQKQTKKKKEEEIDCAVKQKKVVIVTVNAETLRHRARTLTYQPALLWKRVSSNAWPPQIRRFHQLRHSLASFRPSPEKRSATMGDAIDLSGDGGVIKTVVRKSKADAVGPTENFPLVDVHYEGTLADTGEVFDTTHEDNTVFSFEVGKGSVIKAWEIAVKTMKVGEVAKITCKPEYAYGSAGSPPDIPPDATLVFEVELVACRPRKGSSLGSVSEERARLDELKKQRELAAAAKEEEKKKREEAKAAAAARVQAKLDAKKGQGKGKGKAK 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00401 329 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 173 262 IPR001179 GO:0003755
Cca01g00401 329 SUPERFAMILY FKBP-like 148 259 - -
Cca01g00401 329 MobiDBLite consensus disorder prediction 290 329 - -
Cca01g00401 329 Coils Coil 272 311 - -
Cca01g00401 329 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP20-1 142 329 - -
Cca01g00401 329 MobiDBLite consensus disorder prediction 290 307 - -
Cca01g00401 329 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 142 329 - -
Cca01g00401 329 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 175 259 IPR001179 GO:0003755
Cca01g00401 329 Gene3D - 136 261 IPR046357 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00401 Cca-Chr1 4662494 4672560 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00401 145 267 Calmodulin-binding Proteins AT5G48570 36.719 6.76e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00401 K01802 - gmx:100500018 279.641