Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00399 ATGACCCTTTTCACCATTTTCCTCCAAATCCAAACAAGttcttcttcttcttcttcttcttctCTCTCCTCTTCACCCCCAACTCAAACCGTTCTCATGTTGCCTCTTAAAACCCAAACACTCCCACATGGCCTAGTTTCACAATTTGCCTCCCCACGTAAGCTCTTATTCCGCCATAACGTGACATTAACCGTTTCACTAACCGTAGGCACGCCTCCACAGAGCGTTACCATGGTCCTCGACACAGGCAGCGAACTCTCGTGGCTCCACTGCAAAaaaccaaacacaaacacaaacacaaaaaacacaaTCTTCAACCCACTCCTCTCTTCCTCGTACACCCCAACACCATGCACCTCACCCATCTGCACCACCCGAACCCGAGACTTCCCCATACCCGTCTCCTGCGACCCGAGAAAACTCTGCCACGTCACTGTCTCTTACGCCGACATGACCTCCCTGGAAGGCAACCTCGCGGCGGAGACGTTCGCCGTATCCGGGTCGGGTCAACCCGGAACAACATTCGGGTGCATGGACTCCTCCGGGTTCACCTCCAACGCCGACGAGGATTCCAAAACAACCGGGTTAATGGGCATGAACCGAGGTTCACTCTCGTTCGTGACCCAAATGGGGTTTCCGAAATTCTCCTACTGCATCTCCGGCAAAGACACCTCCGGCGTGTTACTCTTCGGCGACGCGAAGTTCTCGTGGCTGGGACCCTTAAAGTACACGCCTTTAGTGAAAATGAACACTCCCTTGCCCTATTACGACCGGGTGGCGTACACGGTTCGGTTGTTGGGTATTCGGGTCGGGTCAAAAAACTTGAATGTGGCGAAGTCGATTTTTTCACCGGACCACACCGGGGCGGGTCAGACGATGGTGGATTCGGGGTCGCAGTTCAGTTTCCTTCTGGGGTCGGTGTACAAGGCTCTGCGGAGCGAGTTTGTGGAGCAGACTAAAGGGGTGTTGAGGGTTTTGGAGGATCCGAATTACGTGTTTGAGGGGGCGATGGACTTGTGCTTCAGGGTGAAGGGGGGTGGGGTGGCGGCGGTGCCGGCGGTGACGCTGGTGTTTGAGGGGGCGATGGACTTGTGCTTCAGGGTGAAGGGGGGTGGGGTGGCGGCGGTGCCGGCGGTGACGCTGGTGTTTGAGGGGGCGGAGTTGGTTGTCTCCGGCGAGAGGTTGTTGTATAGGGTGGCGGAGGGGAGTGATGTGTCCTGTTTGACTTTTGGGAATTCGGATTTGTTGGGGACTGAGGCGTATGTGATTGGACACCATCATCAGCGGAACGTGTGGATGGAGTTTGACTTGGTCAACTCCAGAGTTGGATTTGCTGACACCAGGTGTGAACTTGCTACTCAAACACTTGGCTTAGCTGCTTAG 1383 0.5329 MTLFTIFLQIQTSSSSSSSSSLSSSPPTQTVLMLPLKTQTLPHGLVSQFASPRKLLFRHNVTLTVSLTVGTPPQSVTMVLDTGSELSWLHCKKPNTNTNTKNTIFNPLLSSSYTPTPCTSPICTTRTRDFPIPVSCDPRKLCHVTVSYADMTSLEGNLAAETFAVSGSGQPGTTFGCMDSSGFTSNADEDSKTTGLMGMNRGSLSFVTQMGFPKFSYCISGKDTSGVLLFGDAKFSWLGPLKYTPLVKMNTPLPYYDRVAYTVRLLGIRVGSKNLNVAKSIFSPDHTGAGQTMVDSGSQFSFLLGSVYKALRSEFVEQTKGVLRVLEDPNYVFEGAMDLCFRVKGGGVAAVPAVTLVFEGAMDLCFRVKGGGVAAVPAVTLVFEGAELVVSGERLLYRVAEGSDVSCLTFGNSDLLGTEAYVIGHHHQRNVWMEFDLVNSRVGFADTRCELATQTLGLAA 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00399 460 Pfam Xylanase inhibitor N-terminal 65 232 IPR032861 -
Cca01g00399 460 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 8 359 - -
Cca01g00399 460 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 78 89 IPR001969 GO:0004190|GO:0006508
Cca01g00399 460 PRINTS Pepsin (A1) aspartic protease family signature 69 89 IPR001461 GO:0004190|GO:0006508
Cca01g00399 460 PRINTS Pepsin (A1) aspartic protease family signature 292 303 IPR001461 GO:0004190|GO:0006508
Cca01g00399 460 PRINTS Pepsin (A1) aspartic protease family signature 421 436 IPR001461 GO:0004190|GO:0006508
Cca01g00399 460 Gene3D Acid Proteases 48 232 IPR021109 -
Cca01g00399 460 CDD pepsin_A_like_plant 62 449 IPR034161 -
Cca01g00399 460 Pfam Xylanase inhibitor C-terminal 362 445 IPR032799 -
Cca01g00399 460 ProSiteProfiles Peptidase family A1 domain profile. 63 445 IPR033121 -
Cca01g00399 460 Gene3D Acid Proteases 362 454 IPR021109 -
Cca01g00399 460 Gene3D Acid Proteases 237 361 IPR021109 -
Cca01g00399 460 SUPERFAMILY Acid proteases 362 449 IPR021109 -
Cca01g00399 460 SUPERFAMILY Acid proteases 64 361 IPR021109 -
Cca01g00399 460 PANTHER ASPARTYL PROTEASE-RELATED 357 458 IPR001461 GO:0004190|GO:0006508
Cca01g00399 460 PANTHER ASPARTYL PROTEASE-RELATED 8 359 IPR001461 GO:0004190|GO:0006508
Cca01g00399 460 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 357 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00399 Cca-Chr1 4653671 4655053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00399 64 455 Miscellaneous Gene Families AT1G44130 24.694 9.69e-18 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00399 - - gmx:100783835 627.476