Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00395 ATGGCTAAAATGAAGGAACCTCACTCCCCTTGCTTTTATGCACTATTAGGGAATGAAAGAGCACAAATTAACGGTTCCATTCTCCAAAATACAATGCCTACATCCTTCATTCTCTTCTGCATTCTGGTCTCCATCTCCCTCACAGATGGGACACAACTCATAATTGTAAACAACTGCAAAGAAAGTGTATGGCCTGGAATTCTTGGCAATGGAGCACACCCTTCACCTAAAGATGGTGGGTTTCACCTCGGAAGCGGTGAAGAGATTGTTGTCCAAGTCCCCAAGGTTTGGTCAGGGAGAATCTGGGGCAGACAAGGTTGTTCCTTTGACCAACAAACAGGCAAAGGTTTTTGTCAAACAGGTGACTGTGGAGGCCTTTTACAATGCAATGGCCTTGGTGGAGTCCCTCCTGCAACCCTAGTGGAAATGACCCTTGGAACCTCTCAATCAAAGTTGCACTTCTATGATGTTAGTTTGGTTGATGGCTTTAACCTTCCAGTGTCCATGAAACCCTTATGTGTTGGTGTTGATCCTGGTGCTGATACCGGTGCCAATTGTGGTGTTGCGGGGTGTGAGGCTAACTTGAATGTTTATTGCCCTTCTGCATTGGTTGTGAAGAGTAATGGGAAGGTTGTGGGGTGCAAGAGTGCATGTTTGGCTGCAAAAACTGATAGGTATTGCTGCACTGGAGAGTTTGCTAAAACATGCAAGCCAACTGTGTTTGCTCGTCTTTTCAAGACCGTTTGCCCTCGAGCTTATAGCTATGCTAATGATGATTCCACAGTGCTCAAGACTTGTGTGGCACCTCGCTATGTCATTACGTTTTGTCCTCTACACTGA 840 0.4571 MAKMKEPHSPCFYALLGNERAQINGSILQNTMPTSFILFCILVSISLTDGTQLIIVNNCKESVWPGILGNGAHPSPKDGGFHLGSGEEIVVQVPKVWSGRIWGRQGCSFDQQTGKGFCQTGDCGGLLQCNGLGGVPPATLVEMTLGTSQSKLHFYDVSLVDGFNLPVSMKPLCVGVDPGADTGANCGVAGCEANLNVYCPSALVVKSNGKVVGCKSACLAAKTDRYCCTGEFAKTCKPTVFARLFKTVCPRAYSYANDDSTVLKTCVAPRYVITFCPLH 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00395 279 ProSiteProfiles Thaumatin family profile. 53 279 IPR001938 -
Cca01g00395 279 PANTHER PATHOGENESIS-RELATED THAUMATIN FAMILY PROTEIN 33 278 - -
Cca01g00395 279 PIRSF PR5 16 279 IPR001938 -
Cca01g00395 279 Pfam Thaumatin family 57 277 IPR001938 -
Cca01g00395 279 ProSitePatterns Thaumatin family signature. 114 129 IPR017949 -
Cca01g00395 279 SUPERFAMILY Osmotin, thaumatin-like protein 52 277 IPR037176 -
Cca01g00395 279 Gene3D Thaumatin 52 277 IPR037176 -
Cca01g00395 279 PRINTS Pathogenesis-related protein signature 100 111 IPR001938 -
Cca01g00395 279 PRINTS Pathogenesis-related protein signature 267 276 IPR001938 -
Cca01g00395 279 PRINTS Pathogenesis-related protein signature 52 64 IPR001938 -
Cca01g00395 279 PRINTS Pathogenesis-related protein signature 153 169 IPR001938 -
Cca01g00395 279 PANTHER OS03G0233200 PROTEIN 33 278 IPR001938 -
Cca01g00395 279 SMART tha2 53 277 IPR001938 -
Cca01g00395 279 CDD TLP-PA 52 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00395 Cca-Chr1 4608134 4609643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00395 35 277 Receptor kinase-like Gene Family AT5G38280 41.502 1.44e-49 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00395 - - gsj:114381056 420.239