Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00394 ATGAAAGTTGGCTCCGGAGGAGAGGCACAAATATCGGTTTTCCCATTCGGTGGCAAAACAAACCGGTCCGGCCAGCTCTCTTTTACCGCTGAAACCGGATCCATTAACAGCAAAGCCAACTCAACCGGATCCCACTCTCAATGCCCTAACCGGTCCGTCCGGTCACATCTTCACGGttctcttctcttcttttggactcggttcgttttctcttcctattccgtctctCCCCCATCGATTAAAAAAACAAAAAAAGCGATTCATCAAACCGGTGGTAGTGGTTGGTGTGATTATAGGGAAAAAATGGGCTCAAATCTGGAACCAGTGCCAATTACATCCCAAAAGCATGACCCggcatggaaacatgttcagatgtttaagaatggggataaggtgcagctaaagtgcatatattgtctgaagatgtttaagggtggcgggattcataggattaaggaacaccttgcttgtCAGAAAGGGAATGCATCCACTTGTAGCCGTGTCCCCTCTGATGTGAGGCTTCACATGCAGCAGAGTTTGGATGGGGTTGTGGTCAAAAAGAGGAGGAAGCAGAAAATTGAGGAGGAGATTATGAGTGTTAACCCTTTGACCACTGTTGTCAACTCAGTTCCCAATCAGGTGGATATGAATGAGGGGATCCAGGCTATTGGAATTGAGCACAGTTCTAGTCTGGCACTGAATCCTGGTGAAGGAATGAGTAGAGGTATAGAAAGGAGGAAGAAAATGAGAGCCAGCAAGAATCCTGCAGCAGTTTATGCAAACTCTGAGGGTGTTGTTGCTTTGGAGAAGAGTGCATTGTTTCCCAAAAAGATGGACAACCACATTCATATGGCAATAGGCCGGTTTTTGTATGATATTGgtgcaccttttgatgccgtgaactcagtctattttcatgaaatggttgatgcaattgcttcaaggggggtgggttttgaacggccctcgcatcatgaacttcggggttggatcctgaagaattctgtggaggaagtgaagaatgatatagatagatgcaagatgacttggggaaggactggctgttccattttggttgaccaatggacaacagaaaccggtagaatactgataagctttttggcatattgtcctgaaggcatagtctttttgaagtcctttgatgctactgagaattcagcttctgcagattttctatatgacttgataaaacaagtagtagaagaagttggagttgggcaagtgctgcaagtgatcacgtctggtgaagaacaatatgctattgccggtagacggctgagtgatacttttcctaccctctattggagcccttctgtagcttattgcattgattcaatactcgaagatttcggaaatcttgagtggattagtgcagtgatcgaacaagctaaatctataacaagatttgtgtacaattacggtgcaattttgaatatggttaaaaggtataccttagggaatgatattgtggatccttctttctcacgctttgctacaaactttacctcattgaagcggatggttgatcttaaacacaatttacaggcgttggtcacttctcaggagtgggcggatagcccatactcaaagaaaacagcaggtcttgaaatgttggattgcctaagcaatcaaacattttggtcctcgtgtgacatgattgttcgtctaacggttcctctcttaaagattctgagaatagctggtagtgagatgagacctgcaatgggatacgtttatgctggaatgtaccgggcaaaagaagcaattaaaaaagctcttggtaagagggaggaatatatggtgtactggaatattatacatcatagatgggaaaggctgtggcatcatcctcttcattctgctggattctaccttaatccaaagttcttctatagtattcaaggagatatacatggtcagattgtctcagggatgtttgactgcatagagagattgatacctgatacaagagtccaagataaaattatcaaagagataaatttatacaagtctgctgcaggagactttgggagaaagatggcagtcagagctagagaTAATTTGCTTCCTTctgaatggtggtcaacatatggaggaggttgccctaatttatcgcggttagcaattcgtattctcagccaaacatctagtatgatgtcctgcaagagaaaccagattccttttgagcaaacagtcaacacaaggaattatatagagcgccaacatcttactgatcttgtttttgttcactgcaacttgcgattaagacaaatGTTTATGAGTAAAGAACCAGATTCTAGTGATCCCCTATCATTTGACAGCATTAGCAGCGTTGATGAATGGATCAGACCAAGGGATTTATATTTAGACGAGTACGGGAACTCAGATTGGATGGCACTGGATCCATCTTCTGTTAACACAATGCTTTTAAGGCCTTTAAATGATGAAACTGAAGAACTGGGTGAAGGGTTTGATGATGATGAGATTTTCAGTGATGGGAAAGATAGTGAGGATGAAAACACTGGAGACAAGTTGGTGAACCTTAGCGAATGA 2574 0.1744 MKVGSGGEAQISVFPFGGKTNRSGQLSFTAETGSINSKANSTGSHSQCPNRSVRSHLHGSLLFFWTRFVFSSYSVSPPSIKKTKKAIHQTGGSGWCDYREKMGSNLEPVPITSQKHDPAWKHVQMFKNGDKVQLKCIYCLKMFKGGGIHRIKEHLACQKGNASTCSRVPSDVRLHMQQSLDGVVVKKRRKQKIEEEIMSVNPLTTVVNSVPNQVDMNEGIQAIGIEHSSSLALNPGEGMSRGIERRKKMRASKNPAAVYANSEGVVALEKSALFPKKMDNHIHMAIGRFLYDIGAPFDAVNSVYFHEMVDAIASRGVGFERPSHHELRGWILKNSVEEVKNDIDRCKMTWGRTGCSILVDQWTTETGRILISFLAYCPEGIVFLKSFDATENSASADFLYDLIKQVVEEVGVGQVLQVITSGEEQYAIAGRRLSDTFPTLYWSPSVAYCIDSILEDFGNLEWISAVIEQAKSITRFVYNYGAILNMVKRYTLGNDIVDPSFSRFATNFTSLKRMVDLKHNLQALVTSQEWADSPYSKKTAGLEMLDCLSNQTFWSSCDMIVRLTVPLLKILRIAGSEMRPAMGYVYAGMYRAKEAIKKALGKREEYMVYWNIIHHRWERLWHHPLHSAGFYLNPKFFYSIQGDIHGQIVSGMFDCIERLIPDTRVQDKIIKEINLYKSAAGDFGRKMAVRARDNLLPSEWWSTYGGGCPNLSRLAIRILSQTSSMMSCKRNQIPFEQTVNTRNYIERQHLTDLVFVHCNLRLRQMFMSKEPDSSDPLSFDSISSVDEWIRPRDLYLDEYGNSDWMALDPSSVNTMLLRPLNDETEELGEGFDDDEIFSDGKDSEDENTGDKLVNLSE 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00394 857 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 88 829 - -
Cca01g00394 857 PANTHER OSJNBA0013A04.12 PROTEIN 88 829 - -
Cca01g00394 857 Pfam hAT family C-terminal dimerisation region 681 759 IPR008906 GO:0046983
Cca01g00394 857 MobiDBLite consensus disorder prediction 826 841 - -
Cca01g00394 857 SUPERFAMILY Ribonuclease H-like 355 762 IPR012337 -
Cca01g00394 857 ProSiteProfiles Zinc finger BED-type profile. 114 172 IPR003656 GO:0003677
Cca01g00394 857 Pfam Protein of unknown function (DUF 659) 322 473 IPR007021 -
Cca01g00394 857 MobiDBLite consensus disorder prediction 819 857 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00394 Cca-Chr1 4599697 4603677 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00394 - - gmx:100817502 1398.26