Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00392 ATGACTAATCCCTTTGTGTTCACTCAACCATGCAGCTACTATAAGTTACACCCTCTGGTCACAGGCTACCTAGCACTGAATTTGCAATTCAATTACCTTCTTCCTCTTATCAACAACTCCAACCACACCACTTCCATGGCTGCCTCCGTCTCCACTGTCGGAGCTGTCAACAGAACCCTTTTGAACCTGAATGGAGCTGGAGCTGGTGCCTCAGCTCCCAGTTCAGCCTTCTTTGGAAGCAGCTTGAAGAAGGTTATTGCCTCAAGGGTCCCCAACACCAAGGTTTCCTCTGGAAACTTCAAAATTGTTGCTGCAGAGAAAGAGATTGAGGAGACCCAGCAGACCGATAAGGACAGGTGGAGGGGTCTGGCCTACGATATTTCAGATGACCAGCAAGACATCACAAGGGGGAAGGGTATGGTTGATTCCCTTTTCCAAGCTCCAATGGAAGCTGGAACTCACTATGCAGTCATGAGCTCCTACGAGTACCTTAGCACTGGACTTCGCCAGTACAACTTGGACAACAGCATCGATGGATTTTACATTGCTCCAGCTTTTATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCATGAGCCTTCCCAACATCAAGATTCCTCTCATTCTTGGTATCTGGGGAGGCAAGGGACAAGGAAAATCTTTCCAATGTGAGCTTGTCTTTGCCAAGATGGGAATTAACCCCATCATGATGAGTGCTGGAGAGTTGGAAAGTGGAAACGCAGGAGAGCCAGCAAAATTGATCAGACAGAGATACCGTGAAGCTGCAGACATGATCAAGAAGGGAAAGATGTGCGCCCTCTTCATCAACGATCTTGATGCAGGAGCTGGTCGTCTTGGTGGAACCACCCAATACACTGTGAACAACCAGATGGTGAATGCCACCCTCATGAACATTGCTGACAACCCCACAAATGTGCAGCTTCCTGGTATGTACAACAAGGAAGATAACCCCCGTGTGCCCATCGTTGTCACCGGTAACGATTTCTCAACATTGTATGCTCCTCTCATCCGTGATGGACGTATGGAGAAGTTCTACTGGGCACCAACAAGGGAAGACCGTATTGGTGTTTGCACCGGAATTTTCCGCACTGATGGTGTCGCGGAACAGGACGTTGTCAAGCTTGTTGACACCTTCCCTGGCCAATCCATTGATTTCTTTGGTGCACTGAGGGCCAGAGTGTACGATGATGAAGTGAGGAAGTGGATTTCTGGGGTTGGTGTTGACGGTGTTGGGAAGAAGCTTGTGAACTCAAAAGAAGGGCCTCCAACCTTTGAGCAGCCCAAGATGAATCTGGAGACGCTCTTGCAGTATGGCTACATGCTTGTCCAGGAACAGGAGAATGTGAAGAGAGTCCAGTTGGCTGACAAGTACTTGAACGAGGCTGCTCTTGGTAATGCTAACGAAGATGCTATCAAAAGGGGAACTTTCTAG 1455 0.4838 MTNPFVFTQPCSYYKLHPLVTGYLALNLQFNYLLPLINNSNHTTSMAASVSTVGAVNRTLLNLNGAGAGASAPSSAFFGSSLKKVIASRVPNTKVSSGNFKIVAAEKEIEETQQTDKDRWRGLAYDISDDQQDITRGKGMVDSLFQAPMEAGTHYAVMSSYEYLSTGLRQYNLDNSIDGFYIAPAFMDKLVVHITKNFMSLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDGVAEQDVVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDGVGKKLVNSKEGPPTFEQPKMNLETLLQYGYMLVQEQENVKRVQLADKYLNEAALGNANEDAIKRGTF 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00392 484 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 380 IPR027417 -
Cca01g00392 484 Gene3D - 172 356 IPR027417 -
Cca01g00392 484 Gene3D - 357 469 - -
Cca01g00392 484 Pfam ATPase family associated with various cellular activities (AAA) 212 353 IPR003959 GO:0005524|GO:0016887
Cca01g00392 484 PANTHER ATPASE, AAA-TYPE, CORE, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 46 484 - -
Cca01g00392 484 PANTHER - 46 484 IPR044960 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00392 Cca-Chr1 4573349 4577897 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00392 - - ccaj:109792417 939.873