Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00388 ATGGCGGCTGTCACGGAATTTGGGGTGTCTCAATTCTTGCAGGGTACCTCCAGGCAAACTTTGTTTCTGAAAAAGAGGTCTCAGAGACGAAGTCATATGTTATGGGGTAAGCTTTGGAATCGGAATTGGGTTCTGGGATCATCTTCAAGAGCTTTGCCTTTAAGGTGCCAGGCTCAAGAAAATCCTAAAGCTGTGGTTTCTGGTGGTGTGAGCAGTTCAGTAGAAGAGCAACCGGGTTTGGTTGAGAAGTCTGCCTCAGAAGTTGTTCATTTGTATCGTGTCCCGTTTATGCAAGATAGTGCAGCTGCTGAGCTTCTAAAGGAGGCTCAAGTGAAAATCTCTAATCAGATTGTGGAAATACAGACGGAGCAATGCTATAATATTGGCCTTGGTTCACAACTTTCAAGTAAAAAGTTTTCAGTTCTTAAATGGCTTCTTCAAGAAACGTTTGAGCCTGAGAATCTGGGAACCGAGAGCTTTCTCCAGAAGAAGAGGAAGCAGGGTTTGGTTCCAGTTATCGTCGAGGTTGGCCCCAGGTTGTCATTTACCACAGCATGGTCTACTAATGCTGTGGCAATTTGCCAAGCCTGTGGTTTGACGGAAGTGAACCGTTTGGAACGGTCAAGGAGGTACTTGTTGTTCACCACAAGTGAACTGCAAGATCATCAAATCAATGAGTTTGCATCAATGGTGCATGATAGGATGACTGAATGTGTTTACGCTCAGAAACTAACATCCTTTGAGACCAGTGTAGTTCCAGAAGAAATTCGTTATATACCTGTCATGGAGAGGGGACGAAAGGCATTAGAAGAGATTAATCTGGAGATGGGTTTTGCCTTTGATGACCAGGATTTGGAATTCTACACCAAACTCTTCAGGGAAGACATTAAGCGCAATCCAACAAATGTGGAGTTGTTTGATATTGCGCAGTCCAACAGTGAGCACAGCAGACACTGGTTTTTTTCTGGAAAGATTTTCATTGATGGACAGCTTATGAGTAGAACTCTTATGCAAATTGTGAAAAGTACTCTACAGGCAAATCCAAATAACTCAGTTATTGGCTTTAAGGATAACTCGAGTGCAATAAGAGGTTTCCCAGTAAAGCAGCTCCGACCAGTTCAGCCTGGTTCAGTATGCCCGTTAGATGTTGCAGCACATGAGCTAGATATCTTGTTTACTGCTGAAACACATAATTTTCCATGTGCAGTGGCACCTTATCCTGGTGCAGAGACTGGTGCAGGAGGTCGAATTAGAGATACACATGCTACAGGAAGGGGGTCATTTGTCCAGGCAGCTACAGCTGGTTATTGTGTTGGGAATCTCAACACTGCAGGCTTTTATGCTCCATGGGAAGATCCCTCCTTTACTTATCCATCAAATTTGGCATCACCTTTACAGATTCTTATAGATTCTAGTAATGGTGCATCTGACTATGGGAACAAATTCGGAGAGCCATTGATCCAGGGTTTCTGCAGAACATTTGGAATGAGACTTCCTAGTGGGGATAGGCGAGAATGGTTGAAGCCAATCATGTTTAGTGCAGGCATTGGACAGATTGACCACCTTCATATATCAAAGGGAGAGCCTGACATTGGTATGCTGGTTGTTAAGATTGGAGGTCCGGCTTATCGTATTGGTATGGGAGGTGGGGCAGCCTCAAGCATGGTCAGTGGGCAGAATGATGCGGAGCTTGATTTCAATGCTGTGCAACGTGGGGATGCTGAAATGGCTCAAAAACTATACCGTCTTGTTCGTGCCTGTATTGAGATGGGGGAGAAAAATCCTATTATTAGCATTCATGACCAGGGTGCTGGTGGGAACTGCAATGTTGTAAAGGAAATTATATATCCAAAAGGTGCTGAGATAGATGTCCGAGCAATTGTGGTTGGTGATCATACAATGTCTGTTCTAGAAATTTGGGGTGCAGAGTATCAGGAGCAGGATGCAATCTTGGTGAAGCCTGAGAGTCATGATATCCTTAAATCGATCTGTAGTAGGGAGAAAGTTTCAATGGCTGTTATTGGAACTATTAGTGGTGATGGACGTGTTGTTTTAGTTGATAGTTCAGCAACTCAGAAGTGTATTTCTAATGGACTCCCCCCACCTGCCCCTGCTGTGGATCTTGAACTGGAGAAAGTCCTTGGTGACATGCCTAAGAAATCATTTAAATTTAATCGGGTTGTTTATGAGCGGGAGCCACTAGATCTTGCCCCTGGTGTTGCGGTGATAGATTCTCTGAAGAGGGTATTGAGTTTACCATCTGTCTGTTCAAAACGCTTCTTAACAACAAAAGTTGATAGGTGTGTTACTGGTCTAGTGGCACAGCAGCAGACTGTTGGTCCGTTGCAGATTCCTCTAGCTGATGTTGCTGTTACAGCTCAAACTTTTGCTGATGTGACTGGAGGTGCTTGTGCCATTGGGGAACAACCAATCAAAGGTCTTTTAGACCCCAAAGCAATGGCTCGGTTGGCTGTTGGAGAAGCACTGACAAATCTTGTATGGGCAAAGGTAACTTCTCTTTCTGATGTCAAGGCTAGTGGTAATTGGATGTATGCTGCCAAGCTTGATGGGGAAGGAGCTGATATGTATGATGCTGCCATATCTTTATCTGAAGCAATGATTGAACTTGGCATTGCTATTGATGGAGGGAAAGACAGTCTTTCTATGGCAGCCCATGCTGAAAATGAAGTTGTTAAGGCCCCAGGTAACCTTGTCATCAGTGTTTATGTTACATGTCCTGATATAACAAAAACAGTAACTCCAGATTTAAAATTAAAGGACGATGGTATTTTGCTTCATATTGATTTGTCAAAGGGTAAGAGGCGATTAGGTGGATCTGCTCTTGCCCAAGCATTTGACCAAGTTGGGGATGAGTGTCCTGATCTTGATGATGTTCCTTACCTTAAAAAGGTCTTTGAAGGTGTTCAAGACCTTCTTACTGATGAACTGATCTCTGCTGGTCATGACATCAGTGATGGTGGGCTGCTAGTTTGTGCCTTAGAGATGGCATTTGCCGGAAATTGTGGACTTGATTTGGATTTGACATCACAAGGTAATAGCCTTTTCCAAACACTCTATGCTGAAGAGCTTGGGCTAGTTCTTGAGGTAAGCAAGAAAAATCTGGCTTTGGTAATGGATAAATTGAAAAATGTGGGTGTTTCTGCTGAAGTCATAGGTCAAGTAACTGCCAATCCATTGATAGAAGTTAAGGTTGATGGGGTGTCTCACCTAAGTGAGAAAACTAGCATCCTTAGGGATATGTGGGAAGATACCAGTTTTCAGCTGGAGAAGTTCCAAAGATTGGCATCTTGTGTGGATATGGAGAGAGAAGGGCTAAAACATCGATATGAGCCCTCGTGGCAACTGTCCTTTACTCCTTCCTTTACTGATGGAAAGCTTATGGCTGCAGCTGTTAAACCTAAAGTGGCTGTGATTAGAGAAGAAGGGAGCAATGGAGACAGAGAAATGGCTGCAGCATTTTATGCTGCTGGTTTTGAACCATGGGATATCACTATGTCAGACCTTCTTAATGGAAAGGTCTCTTTGCAAGAGTTTCGTGGGATTGTTTTTGTTGGAGGGTTTAGCTATGCTGATGTGCTGGATTCAGCAAAAGGCTGGTCTGCTTGCATTAGATTCAATGAGCCCGTTTTACAACAATTTCAGGAGTTTTACAAGCGTCCAGACACTTTCAGTCTAGGTGTATGCAATGGATGCCAGTTAATGGCTTTGTTGGGATGGGTACCAGGCCCACAAGTTGGGGGTGTACACGGTGCTGGTGGTGACCTATCACAACCGAGGTTCATTCATAATGAGTCAGGGCGGTTTGAGTGCCGCTTTACAAGTGTGACCATAAAGGACTCACCGGCTATAATGTTCAAAGGTATGGCAGGTAGCACTTTGGGTATTTGGGCTGCTCATGGTGAGGGAAGAGCTTATTTCCCTGATGAAGGTGTGTTGGACCGTATAGTTCATTCTGAGTTAGCTCCTATACGATATTGTGATGATGCTGGGAATCTGACTGAGGCCTACCCTTTCAATGTGAATGGCTCACCTCTAGGGGTAGCAGCTATTTGTTCCCCAGATGGAAGACATCTTGCCATGATGCCTCATCCAGAGCGTTGCTTCTTAATGTGGCAGTTCCCATGGTATCCTAAGCAGTGGGACGTGGACAAGAAGGGGCCTAGTCCTTGGTTGCGCATGTTCCAGAATGCAAGAGAGTGGTGTTCCTGA 4230 0.4433 MAAVTEFGVSQFLQGTSRQTLFLKKRSQRRSHMLWGKLWNRNWVLGSSSRALPLRCQAQENPKAVVSGGVSSSVEEQPGLVEKSASEVVHLYRVPFMQDSAAAELLKEAQVKISNQIVEIQTEQCYNIGLGSQLSSKKFSVLKWLLQETFEPENLGTESFLQKKRKQGLVPVIVEVGPRLSFTTAWSTNAVAICQACGLTEVNRLERSRRYLLFTTSELQDHQINEFASMVHDRMTECVYAQKLTSFETSVVPEEIRYIPVMERGRKALEEINLEMGFAFDDQDLEFYTKLFREDIKRNPTNVELFDIAQSNSEHSRHWFFSGKIFIDGQLMSRTLMQIVKSTLQANPNNSVIGFKDNSSAIRGFPVKQLRPVQPGSVCPLDVAAHELDILFTAETHNFPCAVAPYPGAETGAGGRIRDTHATGRGSFVQAATAGYCVGNLNTAGFYAPWEDPSFTYPSNLASPLQILIDSSNGASDYGNKFGEPLIQGFCRTFGMRLPSGDRREWLKPIMFSAGIGQIDHLHISKGEPDIGMLVVKIGGPAYRIGMGGGAASSMVSGQNDAELDFNAVQRGDAEMAQKLYRLVRACIEMGEKNPIISIHDQGAGGNCNVVKEIIYPKGAEIDVRAIVVGDHTMSVLEIWGAEYQEQDAILVKPESHDILKSICSREKVSMAVIGTISGDGRVVLVDSSATQKCISNGLPPPAPAVDLELEKVLGDMPKKSFKFNRVVYEREPLDLAPGVAVIDSLKRVLSLPSVCSKRFLTTKVDRCVTGLVAQQQTVGPLQIPLADVAVTAQTFADVTGGACAIGEQPIKGLLDPKAMARLAVGEALTNLVWAKVTSLSDVKASGNWMYAAKLDGEGADMYDAAISLSEAMIELGIAIDGGKDSLSMAAHAENEVVKAPGNLVISVYVTCPDITKTVTPDLKLKDDGILLHIDLSKGKRRLGGSALAQAFDQVGDECPDLDDVPYLKKVFEGVQDLLTDELISAGHDISDGGLLVCALEMAFAGNCGLDLDLTSQGNSLFQTLYAEELGLVLEVSKKNLALVMDKLKNVGVSAEVIGQVTANPLIEVKVDGVSHLSEKTSILRDMWEDTSFQLEKFQRLASCVDMEREGLKHRYEPSWQLSFTPSFTDGKLMAAAVKPKVAVIREEGSNGDREMAAAFYAAGFEPWDITMSDLLNGKVSLQEFRGIVFVGGFSYADVLDSAKGWSACIRFNEPVLQQFQEFYKRPDTFSLGVCNGCQLMALLGWVPGPQVGGVHGAGGDLSQPRFIHNESGRFECRFTSVTIKDSPAIMFKGMAGSTLGIWAAHGEGRAYFPDEGVLDRIVHSELAPIRYCDDAGNLTEAYPFNVNGSPLGVAAICSPDGRHLAMMPHPERCFLMWQFPWYPKQWDVDKKGPSPWLRMFQNAREWCS 1409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00388 1409 SUPERFAMILY PurM N-terminal domain-like 741 920 IPR036921 -
Cca01g00388 1409 Hamap Phosphoribosylformylglycinamidine synthase [purL]. 88 1409 IPR010073 GO:0004642|GO:0006189
Cca01g00388 1409 Gene3D Phosphoribosylformylglycinamidine synthase, linker domain 252 312 - -
Cca01g00388 1409 Gene3D - 730 912 IPR036921 -
Cca01g00388 1409 SUPERFAMILY PurM C-terminal domain-like 529 763 IPR036676 -
Cca01g00388 1409 SUPERFAMILY PurS-like 89 247 IPR036604 -
Cca01g00388 1409 CDD PurL_repeat1 304 687 - -
Cca01g00388 1409 SMART GATase_5_2 1139 1408 - -
Cca01g00388 1409 TIGRFAM FGAM_synt: phosphoribosylformylglycinamidine synthase 92 1407 IPR010073 GO:0004642|GO:0006189
Cca01g00388 1409 Pfam AIR synthase related protein, C-terminal domain 942 1071 IPR010918 -
Cca01g00388 1409 Pfam AIR synthase related protein, C-terminal domain 532 685 IPR010918 -
Cca01g00388 1409 PANTHER - 56 1408 - -
Cca01g00388 1409 Gene3D - 313 518 IPR036921 -
Cca01g00388 1409 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 1141 1385 - -
Cca01g00388 1409 PANTHER PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE 56 1408 - -
Cca01g00388 1409 Gene3D - 1085 1409 IPR029062 -
Cca01g00388 1409 SUPERFAMILY FGAM synthase PurL, linker domain 252 319 - -
Cca01g00388 1409 Gene3D - 914 1084 IPR036676 -
Cca01g00388 1409 Gene3D - 519 695 IPR036676 -
Cca01g00388 1409 Pfam CobB/CobQ-like glutamine amidotransferase domain 1139 1408 - -
Cca01g00388 1409 SUPERFAMILY Class I glutamine amidotransferase-like 1137 1408 IPR029062 -
Cca01g00388 1409 CDD PurL_repeat2 788 1061 - -
Cca01g00388 1409 CDD GATase1_FGAR_AT 1142 1405 - -
Cca01g00388 1409 Pfam Formylglycinamide ribonucleotide amidotransferase linker domain 269 318 IPR041609 -
Cca01g00388 1409 SUPERFAMILY PurM C-terminal domain-like 926 1125 IPR036676 -
Cca01g00388 1409 SUPERFAMILY PurM N-terminal domain-like 320 527 IPR036921 -
Cca01g00388 1409 Pfam Formylglycinamide ribonucleotide amidotransferase N-terminal 125 243 IPR040707 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00388 Cca-Chr1 4536415 4541408 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00388 K01952 - gmx:100794589 2632.44