Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00386 ATGGTTGCAGAAGATGAGCCATTGGAGGGCGAACATGGACTCAAGCTCCATGGGGGAAAGTTTGGGTCAAATCTTGAAAGGGAGATCGAAAGAGTGAGACCAAGAAAGGAGGAGAATGATGGAGTGGTTGGCAAGGAAGAAGCACCGACAACACAAACAACCCCTCCGTTGGTTAGAGATAAGATTCAATCTTCATGGTCACAACTCACATGCAGAAACCTAAGCAAAAACACAGTGACAATGGCGAATGCAGAGGGCAGTAGCAGAGGTTCAAGATGGTCCCTCAAGGGAACCACTGCTCTCGTTACTGGAGGCACACGTGGAATAGGTTTCGTTTTTTGTTGGTTGGCGGAGTTTGGTGCCACGGTGTACACTTGCTCTAGGAATGAAGCAGAGCTCAATGCACGCTTAAAGGAGTGGAAAGAGAAGGGGTTTTCAGTTTCTGGTTCGGTTTGCGATGTCACTTCTTCACCCCAAAGAGAGAACCTCATTCAGCAAGTCACTTCTGCCTTCAACGGCAAGCTCAACATATTTGTAAACAATGTTGGAAACACTGTGAGGAAGCCTACAATTGAGTTAACAGGTGAAGAATATTCAACATTGCTGGCACTTAACTTGGACTCTGCATACCATCTGTTCCAACTTGCACATTCTCTTCTTAAAGCATCTGGCAATGGAAGCATTGTGTTCATTTCGTCTGTTGCTGGTCTGACAAGCTTAGGTTCTGGATCCATTTAA 738 0.458 MVAEDEPLEGEHGLKLHGGKFGSNLEREIERVRPRKEENDGVVGKEEAPTTQTTPPLVRDKIQSSWSQLTCRNLSKNTVTMANAEGSSRGSRWSLKGTTALVTGGTRGIGFVFCWLAEFGATVYTCSRNEAELNARLKEWKEKGFSVSGSVCDVTSSPQRENLIQQVTSAFNGKLNIFVNNVGNTVRKPTIELTGEEYSTLLALNLDSAYHLFQLAHSLLKASGNGSIVFISSVAGLTSLGSGSI 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00386 245 Pfam short chain dehydrogenase 99 240 IPR002347 -
Cca01g00386 245 MobiDBLite consensus disorder prediction 1 58 - -
Cca01g00386 245 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 84 245 - -
Cca01g00386 245 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 92 239 IPR036291 -
Cca01g00386 245 Gene3D - 79 245 - -
Cca01g00386 245 PRINTS Glucose/ribitol dehydrogenase family signature 220 236 IPR002347 -
Cca01g00386 245 PRINTS Glucose/ribitol dehydrogenase family signature 173 184 IPR002347 -
Cca01g00386 245 PRINTS Glucose/ribitol dehydrogenase family signature 99 116 IPR002347 -
Cca01g00386 245 MobiDBLite consensus disorder prediction 1 44 - -
Cca01g00386 245 PANTHER TROPINONE REDUCTASE 84 245 IPR045000 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00386 Cca-Chr1 4489327 4494772 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00386 92 245 Miscellaneous Gene Families AT2G29290 60.000 1.18e-59 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00386 K08081 - gmx:100819646 254.603