Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00385 ATGGCGAACGCAGAGGGCAGTAGCAGAGGCTCGAGATGGTCTCTTAAGGGAACCACTGCTCTCGTTACTGGAGGCACACGTGGAATCGGGCACGCTGTGGTGGAGGAACTGGCGGAGTTTGGTGCCACGGTGTACACGTGTTCGAGGAATGAAGCAGAGCTGAATGCATGCTTGAAGGAGTGGAAAGAGAAGGGGTTTTCGGTTTCTGGATCGGTTTGTGATGCATCTTCTCCACCCCAGAGAGAGAAACTCATTCAGCAAGTGGCTTCTGCCTTCAACGGCAAGCTCAACATACTTGTTAACAATGTTGGAACAAATGTGAGGAAACCAACAATTGAGTATACATCCGAAGAATATTCAAAGTTGATGACAACTAACTTGGACTCTGGATACCATCTGTGTCAACTTGCATATTCTCTTCTTAAAGCATCTGGAAATGGAAGTATTGTGTTCATATCTTCTGTTGCAAGTCTGTCAAGCGTAGGTTCTGGAGCTATTTATGCAGCAAGTAAAGCTGCAATCAATCAACTTACGAAATATCTTGCTTGTGAATGGGCAAAAGACAATATAAGGAGCAACTGTGTCGCACCATGGTACACCAAAACACCATTAGTGGAATCTGTAATGCTCTTTCACCCTATTTTATTTTCTGTTCCAATTACTAATCATTTTTTTTTCTTTATGAAGTCTGGTTTCTTGTGTTGA 705 0.434 MANAEGSSRGSRWSLKGTTALVTGGTRGIGHAVVEELAEFGATVYTCSRNEAELNACLKEWKEKGFSVSGSVCDASSPPQREKLIQQVASAFNGKLNILVNNVGTNVRKPTIEYTSEEYSKLMTTNLDSGYHLCQLAYSLLKASGNGSIVFISSVASLSSVGSGAIYAASKAAINQLTKYLACEWAKDNIRSNCVAPWYTKTPLVESVMLFHPILFSVPITNHFFFFMKSGFLC 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00385 234 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 16 211 IPR036291 -
Cca01g00385 234 Pfam short chain dehydrogenase 19 207 IPR002347 -
Cca01g00385 234 Gene3D - 2 217 - -
Cca01g00385 234 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 94 105 IPR002347 -
Cca01g00385 234 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 167 186 IPR002347 -
Cca01g00385 234 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 155 IPR002347 -
Cca01g00385 234 PANTHER TROPINONE REDUCTASE 4 209 IPR045000 GO:0016491
Cca01g00385 234 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 4 209 - -
Cca01g00385 234 PRINTS Glucose/ribitol dehydrogenase family signature 188 205 IPR002347 -
Cca01g00385 234 PRINTS Glucose/ribitol dehydrogenase family signature 167 186 IPR002347 -
Cca01g00385 234 PRINTS Glucose/ribitol dehydrogenase family signature 19 36 IPR002347 -
Cca01g00385 234 PRINTS Glucose/ribitol dehydrogenase family signature 141 157 IPR002347 -
Cca01g00385 234 PRINTS Glucose/ribitol dehydrogenase family signature 94 105 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00385 Cca-Chr1 4485149 4488405 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00385 12 209 Miscellaneous Gene Families AT2G29290 61.111 1.02e-88 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00385 K08081 - gmx:100819646 361.303