Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00380 ATGGGACGTCTAAAGCTGCAAGCTGGTATCAATGCAATAGAGGAGGAGGAACCTGAGGAATGTGATGCTTCCTATCCTAACAAAACAACTTTGGCATGCATGATCAATTCTGAAATTGGGGCTGTTTTGGCGGTCATGAGAAGAAATGTCAGATGGGGAGGCCGTTATATGTCAGGTGATGATCAGCTGGAGCACTCTCTTATTCAGTCTTTCAAGACAGTGAGGAGACAAATCTTTTCATGGCACCACCATCAGTGGCAAGCTATTAACCCTGCCTTGTATCTACAGCCTTTTTTAGATGTAATTAGGTCTGATGAAACCGGTGCCCCAATTACTGGTGTTGCTTTGTCATCTGTTTACAAGATCATGACTCTTGATGTGATTGATCAAAATACTGTCAATGTTGAGAATGCCATGCACTTGGTGGTTGATGCTGTCACTAACTGCAGATTTGAAGTCACTGATCCTTCTTCAGAAGAAGTTGTTTTAATGAAGATACTACAAGTTCTCCTATCTTGTATGAAAAGTAAAGCATCTATAATGTTGAGTAACCAACACGTTTGCACCATAGTGAATACTTGTTTTCGAATAGTTCATCAAGCAGGATCTAAAGGTGAGTTGTTGCAGCAGATAGCACGGTACACAATGCATGAAATTGTAAGGTGTATTTTCTCTCACCTTCAAGATGTTGGTAACACAGACCATGCATTGGTTAATGGGAGCTCTAATTTGAAACAGGAGACCGGAGGCCTAGATAATGAGTATGCTTTTGGAAGTAGACAATTGGAGAATGGCAGTATGAGTTCTGAATATGATAATCAGTCACTATCCACAAACTCTGCTCCCAATGCTGCAAGTGTTGTGAAAGCAACTGTGATGGATGAAAACACAGCGATAACTATTAGTGGCAAGGACGGTGTACCATATGACATGCATCTCATGACTGAACCGTATGGTGTTCCTTGCATGGTGGAAATATTTCACTTTTTGTGTGCGTTGCTGAATGTTGTTGAGCATACGGGAATGGGTCCTAGATCAAACACACTAGCATTTGATGAAGATGTGCCTCTCTTTGCCTTAAATTTAATTAATTCAGCAATAGAACTTGGAGGACCTTCTATTTGTCGTCACCCAAGGTTGCTGAGCTTAATTCAGGATGAATTGTTTCATAATCTGATGCAATTTGATATGGGGCTTCATACCAGCAGCAAGAGTAATGTCTTTGAAGACCTTGCTAATTTGTTGTCCAAAAGTGCATTTCCTGTGAATTGTCCATTGTCTGCCATGCATATTCTTGCTTTGGATGGTCTTATTGCTGTTATTCAAGGAATGGCTGAAAGGATAGCCAATGGATCTGTAAGCTCAGAATATTCTCCAGTGAATCTTGAAGAGTACACTCCATTCTGGATGGTTAAATGTGAGAATTATGATGATCCAAATCATTGGGTTCCTTTTGTCCGCCGAAGAAAGTACATAAAGAGAAGATTGATGATCGGTGCTGACCACTTTAATCGTGATCCTAAGAAAGGTCTAGAGTTTCTTCAAGGAACACATCTTTTGCCTGACAAACTTGATCCTCAAAGTGTTGCCTGCTTTTTCAGATACACTGCTGGGTTGGATAAGAATCTTGTTGGTGATTTCCTAGGAAACCATGATGAATTCTGTGTTCAGGTTCTTCATGAATTTGCTGGAACATTTGATTTCCAAGACATGAACTTAGATACAGCTTTACGTCTATTCTTGGAGACTTTCAGACTGCCTGGAGAATCACAAAAGATACATAGGGTTCTTGAAGCTTTCTCTGAGAGATATTATGAACAATCACCACACATCCTAGCTAACAAGGATGCTGCTCTTGTGTTATCATACTCAATGATAATGCTTAATACAGATCAGCACAATGTGCAAGTTAAAAAGAAGATGACAGAAGAGGATTTTATCCGGAATAATAGGCATATAAATGGTGGCAATGATCTGCCTCGAGAAATGTTGTCAGAGATTTACCATTCAATATGTAAGAATGAAATCCGCACTACCCCCGAACAAGGTGTTGGGTTTCCTGAAATGACACCAAGTCGATGGATTGATCTAATGCATAAGTCTAAAAAAACTGCTCCATTTATTGTATCTGATTCTAAGGCCTACCTTGATCATGATATGTTTGCCATAATGTCAGGCCCAACGATTGCTGCCATCTCTGTGGTATTTGATCACGCTGAACAGGAAGAGGTATACCAAACATGTATGGATGGATTCTTAGCTATTGCTAAAATTTCAGCTTGCCATCATCTTGAAGATGTTCTTGATGATCTGGTAGTGTCTCTTTGCAAGTTCACTACACTTTTAAACCCTTCGTCAGTTGAGGAACCAGTACTTGCCTTTGGAGATGACATGAAAGCAAGAATGGCAACTGTGACAGTATTCACTATAGCAAACAGGTATGGTGATTACATACGCACAGGTTGGAGAAATATTCTTGATTGCATCTTAAGACTGCACAAGCTTGGTCTTCTTCCTGCCCGTGTTGCCAGTGATGCAGCTGATGAGTCAGAGCTTTCTTCTGAAACTGTGCATGGAAAGCCTATTATGAATTCTTTATCCTCAGCTCATATGCAATCTATTGGCACTCCAAGGAGATCCTCAGGATTGATGGGTAGGTTTAGTCAGCTCTTATCTCTTGACACTGAGGAACCAAGATCACAACCTACTGAACAACAACTTGCTGCTCATCAGCGCACCCTTCAAACCATACAGAAATGTCATATAGACAGCATATTCACTGAGAGTAAATTTCTGCAAGCTGAATCTCTGTTGCAGCTAGCAAGAGCACTCACTTGGGCTGCTGGTAGACCTCAAAAAGGGAACAGCACACCTGAGGATGAAGATACAGCAGTTTTCTGCCTGGAGTTGCTGATTGCAATCACTTTGAATAACAGGGACAGAATTGGGATTCTTTGGCAGGGTGTTTATGAACACATATCCAGTATTGTTCAGTCAACTGTAATGCCCTGTGCCCTGGTAGAGAAGGCTGTTTTTGGATTACTGCGGATTTGCCAGCGGTTGCTTCCCTACAAGGAGAACATTGCTGATGAACTTCTGAGGTCATTGCAACTTGTCTTGAAGCTTGATGCCCGGGTAGCAGATGCATATTGTGAGCAGATTACTCAGGAAGTCAGTCGCCTTGTGAAGGCAAATGCTTCTCATATAAGATCTCAGTTAGGATGGCGAACAATTACATCACTACTTTCCATCACAGCTAGACACATAGAAGCATCTGAGGCTGGGTTTGATGCACTATTGTTCATAATGTCTGACAGTGCCCACTTGGTTCCAGCTAATTATGTTTTCTGTGTCGATACTGCCAGGCAGTTTGCTGAGTCTCGTGTTGGACAAGCAGAGCGATCTGTGCGGGCACTAGATCTCATGGCAGGGTCGGTCAATTGCTTGGCCCAGTGGACTAGTGAGGCTAAGGAAGCAATGAAGGAGGACCAAGTGTCGAAATTGTCTCAGGATATCGGAGAGATGTGGTTGAGACTAGTACAAGGTCTAAGGAAGGTATGTTTAGACCAGAGAGAGGAGGTTAGAAATCATGCTTTATTATCATTGCAGAAGTGCTTGACTGGAGCTGATGGTATTTATCTCCCATATAGCTTGTGGTTACAATGTTTTGATCTTGTGATCTTCACTGTGCTTGATGACCTGCTTGAGATTGCACAGGGCCACTCTCAGAAGGACTACCGCAACATGGAAGGCACACTTATCTTAGCAATGAAGCTCTTGTCCAAAGTTTTTCTTCAATTACTCCCAGATTTATCACAATTGTCAACCTTCTGCAAGCTATGGTTAGGTGTGCTGAGCAGAATGGAAAAGTATATGAAGGTGAAGGTTAGGGGGAAAAGAAGTGAGAAGCTTCAAGAGACTGTGCCTGAGCTGCTTAAAAACTCATTGCTTGTTATGAAGATGAGGGGTATACTGGCGCAGAGGAGTGCCTTGGGTGGTGATAGTCTGTGGGAACTAACATGGCTACACGTGAATAACATTTCACCATCATTGCAACTTGAGGTATTCCCCGAGCAGGATTCTGAGCATTTGCAGCACAAACAGGCTGAATCAATAGGAGTTTCGGTGCCTGGTGAAAAGGGTTCTGTTCCTTCAAGTGAAACAGCAAGCCGTGAAGATGCTGGCATTGTTGGTTAA 4197 0.4208 MGRLKLQAGINAIEEEEPEECDASYPNKTTLACMINSEIGAVLAVMRRNVRWGGRYMSGDDQLEHSLIQSFKTVRRQIFSWHHHQWQAINPALYLQPFLDVIRSDETGAPITGVALSSVYKIMTLDVIDQNTVNVENAMHLVVDAVTNCRFEVTDPSSEEVVLMKILQVLLSCMKSKASIMLSNQHVCTIVNTCFRIVHQAGSKGELLQQIARYTMHEIVRCIFSHLQDVGNTDHALVNGSSNLKQETGGLDNEYAFGSRQLENGSMSSEYDNQSLSTNSAPNAASVVKATVMDENTAITISGKDGVPYDMHLMTEPYGVPCMVEIFHFLCALLNVVEHTGMGPRSNTLAFDEDVPLFALNLINSAIELGGPSICRHPRLLSLIQDELFHNLMQFDMGLHTSSKSNVFEDLANLLSKSAFPVNCPLSAMHILALDGLIAVIQGMAERIANGSVSSEYSPVNLEEYTPFWMVKCENYDDPNHWVPFVRRRKYIKRRLMIGADHFNRDPKKGLEFLQGTHLLPDKLDPQSVACFFRYTAGLDKNLVGDFLGNHDEFCVQVLHEFAGTFDFQDMNLDTALRLFLETFRLPGESQKIHRVLEAFSERYYEQSPHILANKDAALVLSYSMIMLNTDQHNVQVKKKMTEEDFIRNNRHINGGNDLPREMLSEIYHSICKNEIRTTPEQGVGFPEMTPSRWIDLMHKSKKTAPFIVSDSKAYLDHDMFAIMSGPTIAAISVVFDHAEQEEVYQTCMDGFLAIAKISACHHLEDVLDDLVVSLCKFTTLLNPSSVEEPVLAFGDDMKARMATVTVFTIANRYGDYIRTGWRNILDCILRLHKLGLLPARVASDAADESELSSETVHGKPIMNSLSSAHMQSIGTPRRSSGLMGRFSQLLSLDTEEPRSQPTEQQLAAHQRTLQTIQKCHIDSIFTESKFLQAESLLQLARALTWAAGRPQKGNSTPEDEDTAVFCLELLIAITLNNRDRIGILWQGVYEHISSIVQSTVMPCALVEKAVFGLLRICQRLLPYKENIADELLRSLQLVLKLDARVADAYCEQITQEVSRLVKANASHIRSQLGWRTITSLLSITARHIEASEAGFDALLFIMSDSAHLVPANYVFCVDTARQFAESRVGQAERSVRALDLMAGSVNCLAQWTSEAKEAMKEDQVSKLSQDIGEMWLRLVQGLRKVCLDQREEVRNHALLSLQKCLTGADGIYLPYSLWLQCFDLVIFTVLDDLLEIAQGHSQKDYRNMEGTLILAMKLLSKVFLQLLPDLSQLSTFCKLWLGVLSRMEKYMKVKVRGKRSEKLQETVPELLKNSLLVMKMRGILAQRSALGGDSLWELTWLHVNNISPSLQLEVFPEQDSEHLQHKQAESIGVSVPGEKGSVPSSETASREDAGIVG 1398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00380 1398 CDD Sec7 493 676 IPR000904 GO:0005085|GO:0032012
Cca01g00380 1398 PANTHER GUANYL-NUCLEOTIDE EXCHANGE FACTOR 405 1367 - -
Cca01g00380 1398 PANTHER GUANYL-NUCLEOTIDE EXCHANGE FACTOR 11 402 - -
Cca01g00380 1398 SMART sec7_5 489 676 IPR000904 GO:0005085|GO:0032012
Cca01g00380 1398 MobiDBLite consensus disorder prediction 1367 1398 - -
Cca01g00380 1398 Pfam Guanine nucleotide exchange factor in Golgi transport N-terminal 321 396 IPR032691 -
Cca01g00380 1398 Pfam Sec7 domain 493 676 IPR000904 GO:0005085|GO:0032012
Cca01g00380 1398 SUPERFAMILY Sec7 domain 490 679 IPR035999 GO:0005085|GO:0032012
Cca01g00380 1398 SUPERFAMILY ARM repeat 129 1287 IPR016024 -
Cca01g00380 1398 PANTHER ARF GUANINE-NUCLEOTIDE EXCHANGE FACTOR GNOM-LIKE 405 1367 - -
Cca01g00380 1398 PANTHER ARF GUANINE-NUCLEOTIDE EXCHANGE FACTOR GNOM-LIKE 11 402 - -
Cca01g00380 1398 Gene3D - 486 568 - -
Cca01g00380 1398 Gene3D - 569 685 IPR023394 -
Cca01g00380 1398 ProSiteProfiles SEC7 domain profile. 485 674 IPR000904 GO:0005085|GO:0032012
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00380 Cca-Chr1 4409737 4414811 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00380 K18443 - pvy:116120515 2082.37