Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00375 ATGGCAGAGGCACAGCAAAGCAGCAGCAGTCACAGAGGAAGGAGGTGGTCTCTGAATGGAATGACAGCTCTTGTCACAGGCGGCACCCGTGGGATCGGGCACGCCATAGTGAGTGACTTGGCCGCGTTTGGCGCTGCCGTGCACACTTGTTCCAGGACCCAAACAGAGCTCAATAAGTGCATACAAGAGTGGCAAACTCAGGGCTTTCAGGTAACTGGATCCGTCTGTGACGTGTCCTCACCAACTCAGAGAGAGAACCTCATTCAGGAAGTGGCATCCACCTTCAATGCCAAACTTAACATCTATATAAACAACGTTGGAACAAACTTTAGAAAGTCAACCATAGAGTACAATGCTGCAGAGTATTCAGAGTTGATGACAGTTAATTTAGACTCCTCATTCCATCTGTCCCAACTTGTGTATCCTCTTCTGAAAGCATCTGAAAAGGGAAGCATTGTGTTCATTTCATCTGTTGCTGGTGTAGTGAGCTTGGGTACTGGATCTGTCTATGCAGCAAGTAAAGCTGCAATTAATCAGCTTACCAAAAATCTGGCTTGTGAATGGGCAAAAGACAACATAAGGAGCAACTGCGTTGTACCATGGGCAACCAGAACCCCGCTTGTACAACATTTGCTCCAAAACCAAAAGTTCGTGGATGATGTTATGTCTCGGACTCCAATTCAGCGTATAGCAGAACCCGAAGAAGTGTCATCGTTGGTGACTTTCCTTTGTTTGCCTGCTGCGTCTTACATCACTGGACAAGTTATTTGTGTTGATGGAGGATTGACTGTCAATGGATTTCAACCCACCATGAGAATCACCTAA 825 0.4642 MAEAQQSSSSHRGRRWSLNGMTALVTGGTRGIGHAIVSDLAAFGAAVHTCSRTQTELNKCIQEWQTQGFQVTGSVCDVSSPTQRENLIQEVASTFNAKLNIYINNVGTNFRKSTIEYNAAEYSELMTVNLDSSFHLSQLVYPLLKASEKGSIVFISSVAGVVSLGTGSVYAASKAAINQLTKNLACEWAKDNIRSNCVVPWATRTPLVQHLLQNQKFVDDVMSRTPIQRIAEPEEVSSLVTFLCLPAASYITGQVICVDGGLTVNGFQPTMRIT 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00375 274 Gene3D - 3 267 - -
Cca01g00375 274 PRINTS Glucose/ribitol dehydrogenase family signature 22 39 IPR002347 -
Cca01g00375 274 PRINTS Glucose/ribitol dehydrogenase family signature 97 108 IPR002347 -
Cca01g00375 274 PRINTS Glucose/ribitol dehydrogenase family signature 144 160 IPR002347 -
Cca01g00375 274 PRINTS Glucose/ribitol dehydrogenase family signature 170 189 IPR002347 -
Cca01g00375 274 PRINTS Glucose/ribitol dehydrogenase family signature 191 208 IPR002347 -
Cca01g00375 274 PRINTS Glucose/ribitol dehydrogenase family signature 226 246 IPR002347 -
Cca01g00375 274 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 157 185 IPR020904 GO:0016491
Cca01g00375 274 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 6 271 - -
Cca01g00375 274 PANTHER TROPINONE REDUCTASE 6 271 IPR045000 GO:0016491
Cca01g00375 274 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 97 108 IPR002347 -
Cca01g00375 274 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 150 158 IPR002347 -
Cca01g00375 274 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 170 189 IPR002347 -
Cca01g00375 274 Pfam Enoyl-(Acyl carrier protein) reductase 29 263 - -
Cca01g00375 274 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 20 265 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00375 Cca-Chr1 4351337 4358317 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00375 14 269 Miscellaneous Gene Families AT2G29290 61.240 7.67e-118 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00375 K08081 - gmx:100800947 483.796