Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00374 ATGGCAGATGCAGAGAACAATACTCACAAACCTCCGAGATGGTCCCTTAATGGAATgactgctcttgtcaccggtggaactcgcggaatagggcatgccatagtggaggagttatgtgggtttggtgccactgtccacacttgttccagaaaccaaactgaGCTCGATAGGTGTTTGACAAAATGGCGCAGTGAGGGGTTTTTGGTTTCTGGGTCTGTCTGTGATGTGTCATCTCAACCCCACAGAGAGAAGCTCATTCAGGAAGTCACTTCCCTCTTCAATGGCAAGCTTAACATTTATGTGAACAATGTTGGTGTAAACTATAGGAAACCAACCATTGAGTACAATGCTGAAGACTATTCACAGATGATGGCAGTCAATTTAGACTCTGCTTACCATCTGTGCCAACTTGCATATCCTCTTCTAAAGGCATCTGGAATGGGAAGCATTGTGTTCATTTCATCTATTGCTGGTGTGGTCAGTGTAGGTACTGGATCCGTCTATGCAGCATGTAAAGCCGCAATCAATCAGCTTACAAAATATATGGCTTGTGAATGGGCTAAAGACAACATAAGGAGCAATTGTGTTGTTCCTGCCACTACCAATACACCACTTGTTGAGCATCTGCTTCGCAACAAGAAGTATGTAGAAGAAATTACATCTCGAACTCCTCTTGGACGCATCGCAGAACCTGAAGAAGTTTCATCCTTGGTGGCTTTCCTTTGTCTGCCTTGTGCCTCATACATCACAGGACAGGTTATTGTTGTTGATGGAGGATTATCGGTTCCAAATGTTGTTCCATGTGCCCAGATTTCAAATGCATTCATCTTTGGCGGCAATAATAGCATAGAGGTGCCATTTGCTGAAGGTGCAGCTGATGCATTGTGCATGCAGCGGCTGAATCCATGCATCTAA 915 0.388 MADAENNTHKPPRWSLNGMTALVTGGTRGIGHAIVEELCGFGATVHTCSRNQTELDRCLTKWRSEGFLVSGSVCDVSSQPHREKLIQEVTSLFNGKLNIYVNNVGVNYRKPTIEYNAEDYSQMMAVNLDSAYHLCQLAYPLLKASGMGSIVFISSIAGVVSVGTGSVYAACKAAINQLTKYMACEWAKDNIRSNCVVPATTNTPLVEHLLRNKKYVEEITSRTPLGRIAEPEEVSSLVAFLCLPCASYITGQVIVVDGGLSVPNVVPCAQISNAFIFGGNNSIEVPFAEGAADALCMQRLNPCI 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00374 304 PRINTS Glucose/ribitol dehydrogenase family signature 168 187 IPR002347 -
Cca01g00374 304 PRINTS Glucose/ribitol dehydrogenase family signature 142 158 IPR002347 -
Cca01g00374 304 PRINTS Glucose/ribitol dehydrogenase family signature 95 106 IPR002347 -
Cca01g00374 304 PRINTS Glucose/ribitol dehydrogenase family signature 189 206 IPR002347 -
Cca01g00374 304 PRINTS Glucose/ribitol dehydrogenase family signature 20 37 IPR002347 -
Cca01g00374 304 PRINTS Glucose/ribitol dehydrogenase family signature 224 244 IPR002347 -
Cca01g00374 304 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 18 262 IPR036291 -
Cca01g00374 304 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 8 263 - -
Cca01g00374 304 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 156 IPR002347 -
Cca01g00374 304 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 187 IPR002347 -
Cca01g00374 304 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 95 106 IPR002347 -
Cca01g00374 304 Gene3D - 2 264 - -
Cca01g00374 304 PANTHER TROPINONE REDUCTASE 8 263 IPR045000 GO:0016491
Cca01g00374 304 Pfam Enoyl-(Acyl carrier protein) reductase 27 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00374 Cca-Chr1 4321667 4341840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00374 13 262 Miscellaneous Gene Families AT2G29290 62.000 3.53e-112 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00374 K08081 - gmx:100775806 483.026