Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00370 ATGGCGGAATTGGAGGAGGAGCAGGTGGGGGATTTCAAGCCCTTCTCCGAGGGTTCTTCGTGCTCCCGTTCGATCAGCGAAACGGTGAACGGCTCTCACCAATTCACGATAAAGGGTTATTCTCTGGCGAAAGGGATGGGTGCGGGGAAGTACATCATGAGCGACACTTTCAGCGTCGGTGGCTACGATTGGGCCATCTATTTCTACCCTGATGGCAAGAACCCCGAGGACAATTCCATGTACGTTTCCGTCTTCATAGCGCTCGCTAGCGACGGGACCGATGTTAGGGCTCTCTTCAAGTTGACGCTGGTGGATCAGAGTGAGAAGGGGAATGATAAGGTTCATAGCCATTTCGATCGCCCCCTCGAGAGTGGACCTTATACCTTGAAGTACAGAGGCAGCATGTGGGGTTACAAGCGTTTCTTCAGGAGAACATTACTGGAAACTTCGGAGTATCTAAAAGATGATTGCCTTGTCATGCATTGCACTGTCGGGGTTGTCAAAACTCGTTTTGAGGGATCTAAACAGGGTGTTATTGTGCCACAGTCAGATATGGGCCAAGATTTTAAGGACTTGTTGGAATCTGAGGTTGGTTGTGACATAGTTTTCAAGGTAAAAAATGAAAGCTTCAAAGCTCATAAGTTGATACTTGCTGCCCGATCTCCTGTGTTTAGAGCACAATTTTTTGGACTTGTTGGGGATCCTAGCTTAGAGGAAGTAGTGGTAGAGGATATTGAGCCCTTTATCTTCAAGGCAATGCTTCTCTTCATTTACTCTGACAAACTTCCCAACATCTATGACGTTACAGACTCAATGCCCATGTGCTCAACTACTGTCATGGTGCAGCATCTCTTAGCTGCTGCTGATCTCTACAATCTTGATCGGCTAAAACTGTTATGCGAATCAAACTTGTGTGATGAAATCAATACTGACAATGTGGCCACAACACTTGCCCTGGCAGAACAACACCACTGTCCACAGCTTAAGGCAGTCTGTTTGAAATTTATTGCAAATCCAGCAAATTTGGGAGCTGTTATGCAGTCCGAAGCTTTTGTGCATTTGAAAGAGAGCTGCCCCTCAATGTTGTTGGAATTGCTGGAGACATTTGCATCAGTGGATGATAATTCAGGCCAAACATTGAGCAGAAAGAGAAGTGGCAGTAGCATATATGGTCAAGATTTAGCAGATGGGGCAGCTGCTGAATCAGTCAATCCAATTGGCAGGCGAGTAAGGAGGCGGACATAA 1245 0.4643 MAELEEEQVGDFKPFSEGSSCSRSISETVNGSHQFTIKGYSLAKGMGAGKYIMSDTFSVGGYDWAIYFYPDGKNPEDNSMYVSVFIALASDGTDVRALFKLTLVDQSEKGNDKVHSHFDRPLESGPYTLKYRGSMWGYKRFFRRTLLETSEYLKDDCLVMHCTVGVVKTRFEGSKQGVIVPQSDMGQDFKDLLESEVGCDIVFKVKNESFKAHKLILAARSPVFRAQFFGLVGDPSLEEVVVEDIEPFIFKAMLLFIYSDKLPNIYDVTDSMPMCSTTVMVQHLLAAADLYNLDRLKLLCESNLCDEINTDNVATTLALAEQHHCPQLKAVCLKFIANPANLGAVMQSEAFVHLKESCPSMLLELLETFASVDDNSGQTLSRKRSGSSIYGQDLADGAAAESVNPIGRRVRRRT 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00370 414 SMART math_3 35 147 IPR002083 GO:0005515
Cca01g00370 414 CDD BTB_POZ_BPM_plant 185 305 - -
Cca01g00370 414 MobiDBLite consensus disorder prediction 1 23 - -
Cca01g00370 414 ProSiteProfiles MATH/TRAF domain profile. 30 164 IPR002083 GO:0005515
Cca01g00370 414 Gene3D Potassium Channel Kv1.1; Chain A 175 303 IPR011333 -
Cca01g00370 414 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 29 169 IPR008974 GO:0005515
Cca01g00370 414 CDD MATH 31 164 IPR002083 GO:0005515
Cca01g00370 414 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 3 18 379 - -
Cca01g00370 414 CDD BACK_AtBPM-like 305 368 IPR034090 -
Cca01g00370 414 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 18 379 IPR045005 GO:0016567
Cca01g00370 414 Pfam BTB/POZ domain 189 306 IPR000210 GO:0005515
Cca01g00370 414 SUPERFAMILY TRAF domain-like 27 166 - -
Cca01g00370 414 ProSiteProfiles BTB domain profile. 199 262 IPR000210 GO:0005515
Cca01g00370 414 SMART BTB_4 199 308 IPR000210 GO:0005515
Cca01g00370 414 Gene3D - 307 388 - -
Cca01g00370 414 SUPERFAMILY POZ domain 181 306 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00370 Cca-Chr1 4233678 4241627 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00370 K10523 - gmx:100786636 791.186