Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00356 ATGTCTCAATTCATCCCAAGTCTAAAGCCAAGCAACAATAATCAGCCTAGGGTGGTTCATGAAGCGGCCTTCTTCCTTGCCGTTTACTGTATCTCCTTGGGCATTGGAGGACACAAACCATCCTTGGAAAGCTTTGGAGCTGACCAATTTGATGACGAACACAGGGAAGAAAGGAAGAAGAAGATGTCTTTCTTCAACTGGTGGAGCTTCATTGTGTGCTTTGCATTGTTGCTTGGTGCCACAATGGTTGTTTATGTTCAAGACTTTGTGAGTTGGGGAGTTGCTAGTCTCATCCTCACTATTCTCATGGCTCTCAGTACCATAGCTTTCTATGCAGGGAGGCCTTTTTACAGGTACAAGCAGCCACAAGGGAACCCTTTTAGGCCAATTTTACAAGTATTATTTTCAGCAATAAGGAAAAGGAATTTGTCATGTCCTTCAGATCCTGCTCTATTGTATGAAGTCCCAGCGTCAGACAAGTCCCAAGGAAGGCTTCTGAGCCATACTAGCAGGCTCAGGTTTCTTGACAAGGCTGCAATAATTGAAGAGAAATATGTTGAGCAGAAAGACAATACATGGAGATTAGCAACAGTGACAAGAGTGGAGGAGACAAAACTTGTTCTAAACGTATTTCCCATTTGGCTTACTTCATTAACAGCTGGGTTATGTATGGCACAAGCCTCAACACTTTTTGTGAAACAAGCAACTGTTATGAACTTAAACATAAGCAACAATTTCAAACTACCACCAGCTTCTCTTATCTCAATTACAGCCCTTGGTACCTTAATATCTCTCCCAATATACGATAGGATCATTGTTCCAACTCTAAGGAAAGTGACAGGTAATGAAAGAGGCATTAGCATCCTAAGGAGGATTGGCATTGGCTTGACATTATCAGTCATACTTATGGTGGTTGCTGCCTTAGTAGAAGCAAAGAGATTATTAAGAAGTGATGAAGGGACTATAATGAGTGTGTCCTGGTTGATACCCCAATACTTGATACTTGGCATTGGAAATTCATTTTCCCTAGTTGGGATGCAAGAGTATTTCTATGACCAAGTTCCTGACTCAATGAGAAGTTTGGGAGTGGCTTTTTATCTTGGTTCAAATGGAGTAGGAAACTTCTTGAGCAGCTTTTTGATCATGATTGTGGACAATGTCACTGGAAAATCTGGAAAGAGTTGGATTGGGAAGGACATAAATTCAAGCCGTTTGGATAGGTATTATTGGATGTTGGCTATGATCAATGCTTTGGATTTGTGTGCCTTTCTCTTCTTGGCAAAGAGGTACACTTACAAGACTGTACAGAGGAGAAATATGGATGTGGATCATGGTTGCAAGAGTGATGAGGTGGAGATAAGGGCATAA 1368 0.4137 MSQFIPSLKPSNNNQPRVVHEAAFFLAVYCISLGIGGHKPSLESFGADQFDDEHREERKKKMSFFNWWSFIVCFALLLGATMVVYVQDFVSWGVASLILTILMALSTIAFYAGRPFYRYKQPQGNPFRPILQVLFSAIRKRNLSCPSDPALLYEVPASDKSQGRLLSHTSRLRFLDKAAIIEEKYVEQKDNTWRLATVTRVEETKLVLNVFPIWLTSLTAGLCMAQASTLFVKQATVMNLNISNNFKLPPASLISITALGTLISLPIYDRIIVPTLRKVTGNERGISILRRIGIGLTLSVILMVVAALVEAKRLLRSDEGTIMSVSWLIPQYLILGIGNSFSLVGMQEYFYDQVPDSMRSLGVAFYLGSNGVGNFLSSFLIMIVDNVTGKSGKSWIGKDINSSRLDRYYWMLAMINALDLCAFLFLAKRYTYKTVQRRNMDVDHGCKSDEVEIRA 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00356 455 Pfam POT family 2 391 IPR000109 GO:0016020|GO:0022857|GO:0055085
Cca01g00356 455 Gene3D MFS general substrate transporter like domains 1 440 IPR036259 -
Cca01g00356 455 SUPERFAMILY MFS general substrate transporter 22 434 IPR036259 -
Cca01g00356 455 PANTHER OS03G0204700 PROTEIN 1 437 - -
Cca01g00356 455 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 1 437 IPR000109 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00356 Cca-Chr1 4105273 4108374 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00356 1 436 Organic Solute Cotransporters AT2G37900 56.335 0.0 530
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00356 - - gmx:102669046 741.88