Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00334 ATGCCAAAAGGGATGGCTTCAGTCACCACCACATTTTCACTAATGTTGCAGTTTCTGTTCCTAACATTATGTTGGTTTGGTCAGCCAAGCTTAGCTTTCACACGGCAAGAGTATCACGAGGCTCTTGAGAAATCCATTCTCTTCTTTGAGGGACAAAGATCAGGAAAATTGCCTTCCAACCAGCGACTAACATGGAGGGGAGATTCTGCATTGTCTGATGGCTCTTCTTATCATGTGGACCTAGTAGGAGGCTATTATGATGCTGGAGATAACGTCAAGTTTGGGTTGCCAATGGCCTTTACCACTACATTGTTAGCATGGAGTGTGATTGAATTTGGAAGCTCAATGCAGGAGCAGATTGAAAACGCTAGAGCTGCTATCAGGTGGAGCACGGATTACCTACTGAAGGCAGCCACCACCACCCCTGACACATTATATGTCCAAGTAGGAGACCCTAACATGGATCACAAATGTTGGGAAAGGCCTGAAGATATGGACACACCCCGCAACGTGTACAAGGTATCAGCTCAAAACCCAGGATCAGATGTAGCAGCAGAGACAGCAGCTGCATTGGCAGCTTCTTCAATAGTATTCAAAGATTCAGATCCCACCTATTCCTCCAAGTTGCTTCAAGCAGCCATCAAAGTATTCAATTTTGCAGATCGTTACAGGGGTTCTTATAGTGACTCTCTTAGTTCGGTTGTGTGTCCATTTTATTGCTCTTACTCTGGATACCATGATGAGCTTCTGTGGGGTGCATCATGGATTTATAAAGCCTCGGGAATTAGCTCATACATACAATATATACGATCCAATGGCCACATATTAGGTGCAGATGATGATGATTACTCCTTCAGTTGGGATGACAAGCGACCTGGGACCAAAGTCCTGCTATCCAAGGAATTCCTGGAGAAAAATTCTGAAGAGTTCCAATTATATAAGGCACATGCAGACAATTACATATGTTCTCTAATGTCGGGTACACCAGGTTTCCAAGCTCAGTACACAAGAGGGGGGCTTCTATACAAAGGGAGTGAGAGCAATTTGCAATACGTGACATCGACGAGCTTCCTTGTCCTGACATACGCCAAGTACCTGAACTCAAACGGTGGTGGTGTCTCATGTGGGAGTTCAAGAGTGACGGGGCAAAACCTCGTAACACTGGCTAAGACACAAGTGGATTACATTCTAGGCAACAATCCCAGGAAGATGTCTTATATGGTGGGTTTTGGGAGTAGGTATCCAATGCATATCCACCACAGGGGTTCCTCTCTGCCTTCCCTGCACGCCCACTCCCAGCATGTTTCCTGCAACGATGGCTTTCAATACCTCTATTCTAGTTCGCCCAATCCTAATGTCCTGGTTGGAGCCATAGTTGGTGGTCCCGATAGCAGTGACAATTTCTCTGATGATAGAAATAACTATCAACAGTCAGAGCCAGCAACCTACATCAATGCACCCTTTGTAGGTGCTCTTGCCTATTTCTCTTTCCAAACCCCAAGCAATTAG 1509 0.4546 MPKGMASVTTTFSLMLQFLFLTLCWFGQPSLAFTRQEYHEALEKSILFFEGQRSGKLPSNQRLTWRGDSALSDGSSYHVDLVGGYYDAGDNVKFGLPMAFTTTLLAWSVIEFGSSMQEQIENARAAIRWSTDYLLKAATTTPDTLYVQVGDPNMDHKCWERPEDMDTPRNVYKVSAQNPGSDVAAETAAALAASSIVFKDSDPTYSSKLLQAAIKVFNFADRYRGSYSDSLSSVVCPFYCSYSGYHDELLWGASWIYKASGISSYIQYIRSNGHILGADDDDYSFSWDDKRPGTKVLLSKEFLEKNSEEFQLYKAHADNYICSLMSGTPGFQAQYTRGGLLYKGSESNLQYVTSTSFLVLTYAKYLNSNGGGVSCGSSRVTGQNLVTLAKTQVDYILGNNPRKMSYMVGFGSRYPMHIHHRGSSLPSLHAHSQHVSCNDGFQYLYSSSPNPNVLVGAIVGGPDSSDNFSDDRNNYQQSEPATYINAPFVGALAYFSFQTPSN 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00334 502 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 395 421 IPR018221 -
Cca01g00334 502 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 468 486 IPR033126 -
Cca01g00334 502 PANTHER ENDOGLUCANASE 4 16 497 - -
Cca01g00334 502 Gene3D - 33 501 IPR012341 GO:0005975
Cca01g00334 502 SUPERFAMILY Six-hairpin glycosidases 36 495 IPR008928 GO:0005975
Cca01g00334 502 Pfam Glycosyl hydrolase family 9 38 492 IPR001701 GO:0004553|GO:0005975
Cca01g00334 502 PANTHER ENDO-1,4-BETA-GLUCANASE 16 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00334 Cca-Chr1 3814292 3817547 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00334 36 496 Glycoside Hydrolase AT1G02800 64.859 0.0 611
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00334 - - gmx:732658 894.034