Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00333 ATGTCCAGTCCAGCTTCAAAAGCCAGTTGGACACCTGGATTCCATAGAATATTTGTTGATTTATGCCTTGGAGAAATGCTGAAGAATGAGCCCGGGTCGACGCGAATTACCAAGGCGGGTTGGAGGAACATTGTTGGATCCTTTTATGCAAAGACTGGTGTGAGATATGACAAAAAGCAATTTAAGAATCACTATGATTCTACCAGAAAGCTATGGAAAGTCTGGGTCAAGTTGACTGATGATAGTAGCATGAAGTGGGATCCAGAAACACGAACGTTCGGTGCGTCCGAGGAAGACTGGCAAAATTATGTAAAGCAGGTGATACCAGAAGCGGCACAGTTTCAGTCTAAGGAAATCCAGTTTAAGGACAAACTGGATATCATCTTTGATGGAGAAAATCATATCGAGGAAATGAAAAGGCTTGCAAGTCTCAAGCGGCAACATGATGCTTCAGCTACATCTACTTTGCGCGGAAAAGAGCGGGAGAAGAAACGCAAGAATGTTAGTAGGGATTATGAATCTGATAGTACCATTATGGTTGACTATGTGCCAACACCAAAAGCGTCTTGGACACCTACATACCATAAAATATTTGTTGACTTGTGCATTGAAGAAACATTGAAAGGGAACAAGTCTGGAACACATTTTACCAAGGAGGGCTGGAGGAATATTGTTGGATCCTTTACTACAAAGACTGGGATGAGATATGACAAAAAACAAATTAAGAATCACTATGATTCAACCAGAAAACTATGGAAAATCTGGGATAAGTTGATTGGTGATGATAACATGAAATGGGACCCACAAACCAATAAGTTTGGTGCTTCTGAGGAAAACTGGCACAATTTTATAAAGGCATTCCCAGAAGCTGCACAATTTCGGTTTAAGGAACTTCAGTTTTCTGACAAATTAAACATCATCTTTGATGGAGCTATGCCAACTGAGGAAATGATAACGAGGCTTAAAAGGCAGAATGATGCTTCAGCTACATCACGTGGAAAAGAGCGAGAGAAGAAGCGTAGGAATGTTTTTCGGGATTGTGAATTAAAGAGTGCCATTATGGTTAATGCTATCCCAATCAGTACAGTTCCAAGTGAGCAGAGCATGTCTAGTTCATCACATCCCAAGGTCAAAGCTGCATGGACACCGTCAGTGCATAAGATCTTTGTTGATCTATGTCTCCAAGAGACATTAAAGGGGAATAAGCCTGGGACACATTTCACGAAGGAAGGTTGGAAGAACATTATGGATTCATTTTATGCAATAACTGGTTTGAATTATGGTAGATTACAACTTAAGAATCACTGGGATTCTACCAAGGAACAATGGAAAATTTGGTGTAAGCTTATTGGCACCAGTTACATGAAATGGGATCCATCTAACAAGAAATTTGAGGCTAGTGAAGAAGGCTGGATTAACTATTTACAGGAAAACCCAGAAGCTGCGCAATTCCGCTTTAAGGAACTACAATTCACTGACATATTGGAAACCATCTTTAATGGAACTACTGTTACTGGGGAGACTGAACCTGCTGCTTTGCAACAAAGGAAAAGTGATGATAGCGTTATTACTTTCCCCTTGCACTCAAAAGAACTCGACACAGCCAACTTAGACGTGAAAATTGAATGTCGTTGTGATGCTGTTGCATCAAGAAATGGTGTCAGTATTCAAAAGAATGCTAGCGCAGTTTCATCCACTGAAAGCAAACGTAATTATAGTATCGGTGAATGCATTGAATGCCTTGATAAAATGGAAGAAATAGAGCAAGGAAGTGATCTTTACATGTTTGCTTTAGATGTATTTCTTAAGCAGGAATATAGGGAAATTTTTCTGCAATTGAAGAAGTCTAATTTGAGGATATCGTGGTTGCAGCGGCTTCAGTCTGGTGGTCCACCTTCTCTCTAG 1905 0.4021 MSSPASKASWTPGFHRIFVDLCLGEMLKNEPGSTRITKAGWRNIVGSFYAKTGVRYDKKQFKNHYDSTRKLWKVWVKLTDDSSMKWDPETRTFGASEEDWQNYVKQVIPEAAQFQSKEIQFKDKLDIIFDGENHIEEMKRLASLKRQHDASATSTLRGKEREKKRKNVSRDYESDSTIMVDYVPTPKASWTPTYHKIFVDLCIEETLKGNKSGTHFTKEGWRNIVGSFTTKTGMRYDKKQIKNHYDSTRKLWKIWDKLIGDDNMKWDPQTNKFGASEENWHNFIKAFPEAAQFRFKELQFSDKLNIIFDGAMPTEEMITRLKRQNDASATSRGKEREKKRRNVFRDCELKSAIMVNAIPISTVPSEQSMSSSSHPKVKAAWTPSVHKIFVDLCLQETLKGNKPGTHFTKEGWKNIMDSFYAITGLNYGRLQLKNHWDSTKEQWKIWCKLIGTSYMKWDPSNKKFEASEEGWINYLQENPEAAQFRFKELQFTDILETIFNGTTVTGETEPAALQQRKSDDSVITFPLHSKELDTANLDVKIECRCDAVASRNGVSIQKNASAVSSTESKRNYSIGECIECLDKMEEIEQGSDLYMFALDVFLKQEYREIFLQLKKSNLRISWLQRLQSGGPPSL 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00333 634 MobiDBLite consensus disorder prediction 321 341 - -
Cca01g00333 634 PANTHER L10-INTERACTING MYB DOMAIN-CONTAINING PROTEIN 185 311 - -
Cca01g00333 634 PANTHER L10-INTERACTING MYB DOMAIN-CONTAINING PROTEIN 310 633 - -
Cca01g00333 634 PANTHER L10-INTERACTING MYB DOMAIN-CONTAINING PROTEIN 5 164 - -
Cca01g00333 634 PANTHER MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED 5 164 IPR045026 -
Cca01g00333 634 PANTHER MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED 185 311 IPR045026 -
Cca01g00333 634 PANTHER MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED 310 633 IPR045026 -
Cca01g00333 634 MobiDBLite consensus disorder prediction 146 170 - -
Cca01g00333 634 Pfam Myb/SANT-like DNA-binding domain 9 103 IPR024752 -
Cca01g00333 634 Pfam Myb/SANT-like DNA-binding domain 381 474 IPR024752 -
Cca01g00333 634 Pfam Myb/SANT-like DNA-binding domain 189 283 IPR024752 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00333 Cca-Chr1 3802031 3805145 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00333 - - gmx:100793529 1138.64