Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00331 ATGGAAACTGGCATAGCATGCTACACCCGCGGGCCTTTCTTGCCTACTGTTTCTTCCAAGCACTCTCCACCTTCCATCTCTCCATCTTTTGGCTTCAGGAGTCTGAAATCAAGCTCTTTATTTGGAGAATCGCTAAGAGTGACATCCAAATCCACACTAAAGGTTTCAAAGACAAAGGATACTTCACTTATAACTAGATGCGAAATTGGTGACAGTCTGGAAGAATTCCTCACAAAAGCAACACCCGATAAGGGGCTGATCAGGTTGTTGGTGTCCATGGGAGAAGCATTAAGAACAATTTCCTTCAAAGTGAAGACTGCTTCTTGTGGTGGAACACAATGTGTTAATTCTTTTGGGGACGAGCAGCTTGCAGTGGATATGCTGGCTAACCAGCTTCTTTTTGAGGCCTTAAATTACTCCCATTTTTGCAAGTATGCTTGCTCTGAAGAAATTCCTGAGCTCCAAGACATGGGAGGTCCAATTGAAGGTGGGTTTAGTGTTGCATTTGATCCCCTTGATGGGTCTAGCATTGTGGACACAAACTTCACAGTAGGCACCATCTTTGGCGTGTGGCCTGGAGATAAGTTGACCGGGGTCACAGGAAGAGATCAAGTTGCTGCAGCCATGGGGGTTATGGGTCCTAGAACTACGTATGTGCTTGCTCTTAAGGACTTCCCTGGCACCCATGAATTTCTTTTGCTTGATGAAGGAAAATGGCAGCATGTCAAAGAAACCACAGAAATTGGAGAAGGAAAATTGTTCTCCCCAGGAAATTTGAGAGCCACATCTGACAACCCCGATTATGCTAAGTTGATTGATTACTATGTCAATGAAAAGTACACACTAAGATACACAGGAGGAATGGTGCCAGATGTCAACCAGATTATTGTAAAAGAAAAAGGGATCTTCACAAACGTGGCATCAGCATCGGCCAAAGCCAAGTTGAGATTGTTGTTTGAGGTAGCTCCTTTGGGATTATTAATTGAAAAAGCTGGAGGTTATAGCAGTGATGGTCATCAGTCTGTGTTGGACAAAGTCATCAATAACATTGATGAGAGAACTCAAGTTGCTTATGGATCCAAGAATGAGATCATTCGGTTTGAAGAAACCTTGTACGGTAAATCCAGACTCAAGGGTGGTGTAGCTGTTGGAGCAGTTGCTTAA 1164 0.4364 METGIACYTRGPFLPTVSSKHSPPSISPSFGFRSLKSSSLFGESLRVTSKSTLKVSKTKDTSLITRCEIGDSLEEFLTKATPDKGLIRLLVSMGEALRTISFKVKTASCGGTQCVNSFGDEQLAVDMLANQLLFEALNYSHFCKYACSEEIPELQDMGGPIEGGFSVAFDPLDGSSIVDTNFTVGTIFGVWPGDKLTGVTGRDQVAAAMGVMGPRTTYVLALKDFPGTHEFLLLDEGKWQHVKETTEIGEGKLFSPGNLRATSDNPDYAKLIDYYVNEKYTLRYTGGMVPDVNQIIVKEKGIFTNVASASAKAKLRLLFEVAPLGLLIEKAGGYSSDGHQSVLDKVINNIDERTQVAYGSKNEIIRFEETLYGKSRLKGGVAVGAVA 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00331 387 PRINTS Sedoheptulose-1,7-bisphosphatase family signature 122 137 IPR023079 GO:0005975|GO:0016791
Cca01g00331 387 PRINTS Sedoheptulose-1,7-bisphosphatase family signature 138 158 IPR023079 GO:0005975|GO:0016791
Cca01g00331 387 PRINTS Sedoheptulose-1,7-bisphosphatase family signature 198 216 IPR023079 GO:0005975|GO:0016791
Cca01g00331 387 PRINTS Sedoheptulose-1,7-bisphosphatase family signature 252 268 IPR023079 GO:0005975|GO:0016791
Cca01g00331 387 PRINTS Sedoheptulose-1,7-bisphosphatase family signature 282 302 IPR023079 GO:0005975|GO:0016791
Cca01g00331 387 PRINTS Sedoheptulose-1,7-bisphosphatase family signature 344 368 IPR023079 GO:0005975|GO:0016791
Cca01g00331 387 Gene3D - 68 244 - -
Cca01g00331 387 CDD FBPase 69 371 IPR000146 GO:0005975|GO:0016791
Cca01g00331 387 PANTHER SEDOHEPTULOSE-1,7-BISPHOSPHATASE, CHLOROPLASTIC 72 374 - -
Cca01g00331 387 PANTHER FRUCTOSE-1,6-BISPHOSPHATASE-RELATED 72 374 IPR000146 GO:0005975|GO:0016791
Cca01g00331 387 Hamap Fructose-1,6-bisphosphatase class 1 [fbp]. 71 373 IPR000146 GO:0005975|GO:0016791
Cca01g00331 387 Pfam Fructose-1-6-bisphosphatase, N-terminal domain 64 244 IPR033391 -
Cca01g00331 387 Gene3D - 245 386 - -
Cca01g00331 387 SUPERFAMILY Carbohydrate phosphatase 67 370 - -
Cca01g00331 387 ProSitePatterns Fructose-1-6-bisphosphatase active site. 313 325 IPR020548 GO:0005975|GO:0042578
Cca01g00331 387 Pfam Fructose-1-6-bisphosphatase, C-terminal domain 250 370 IPR044015 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00331 Cca-Chr1 3788094 3791391 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00331 K01100 - gmx:100786122 728.783