Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00313 ATGCTACCCCAGAAGCAAGCTGAAGAAGCCATGATGTCAAGCCTCAGCCAAACCATTGAGCATGAGGAGGGAGAGGAAGTCAAAGGGGATACCTCACATTTTAGCTTGAAAAATATTCTCTGGCATGGTGGTTCTGCCTATGATGCTTGGTTCAGCTGTGCCTCAAATCAGGTTGCTCAGGTTCTGTTGACTCTGCCTTACTCATTCTCTCAGCTGGGAATGGTTTCAGGAATCATATTCCAAGTCTTCTATGGCTTGCTTGGGAGTTATACTGCTTATTTAATTAGCATTCTGTACATTGAGTACAGGAGCCGGAAAGAGAAAGAGAATGTCAGCTTCAAAAACCATGTCATTCAGTGGTTTGAAGTGCTGGAAGGCTTGCTGGGTCCATACTGGAAAGCTATTGGATTGGCCTTCAATTGCACTTTTCTCCTCTTTGGATCTGTCATCCAGCTTATAGCTTGTGCAAGTAACATATACTATATAAATGACCACTTGGACAAGAGGACTTGGACCTACATTTTTGGGGCATGTTGTGCTACAACAGTGTTCATTCCATCATTCCACAACTACAGGATCTGGTCCTTCCTTGGCCTTGGCATGACCACCTACACTGCTTGGTATTTGACCATCGCAGCCCTTGTTCATGGCCAGGTTGAAAATGTGACGCATTCGGCCCCAAACAAGATGGTTTTATATTTCACAGGCGCAACCAACATACTCTACACTTTCGGCGGGCACGCCGTCACAGTGGAAATCATGCATGCAATGTGGAAGCCCCAGAAGTTCAAATATATATACTTTTATGCAACAATTTATGTGTTCACCCTCACTCTACCATCTGCTATTTCCGTTTACTGGGCCTTTGGTGACCAACTTTTGGATCACTCCAATGCCTTCTCTCTCCTCCCTCGCTCTGGTTGGCGTGACACTGGTGTCATCCTTATGCTTATTCACCAGTTCATCACATTTGGGTTTGCTTGTACGCCACTGTATTTCGTGTGGGAGAAAGTGATAGGAATGCATGACACAAAGAGCATATGTTTGAGGGCACTAGCCAGGTTACCTGTGGTGATACCAATATGGTTTTTGGCTATTATTTTCCCTTTCTTTGGCCCAATTAATTCTGCTGTGGGGGCCCTATTGGTCAGTTTCACCGTTTACATCATCCCTGCTTCAGCCCATATGCTCACCTACAGATCTGCCTCTGCAAGACAGAATGCAGCGGAGAAATTACCCTTCTTTATTCCAAACTGGACGGTGATGTATGTGGTGAATGCATTTGTGGTGGTGTGGGTTCTGGTGGTGGGCTTTGGATTTGGAGGGTGGGCCAGCATGACAAATTTCATCAAACAGGTTGACACATTCGGACTATTTGCCAAGTGCTACCAGTGCCCCCAAAAAGTCCTTCCCTCCAATCACACCTTGCATCACTGA 1437 0.4572 MLPQKQAEEAMMSSLSQTIEHEEGEEVKGDTSHFSLKNILWHGGSAYDAWFSCASNQVAQVLLTLPYSFSQLGMVSGIIFQVFYGLLGSYTAYLISILYIEYRSRKEKENVSFKNHVIQWFEVLEGLLGPYWKAIGLAFNCTFLLFGSVIQLIACASNIYYINDHLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAALVHGQVENVTHSAPNKMVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYFYATIYVFTLTLPSAISVYWAFGDQLLDHSNAFSLLPRSGWRDTGVILMLIHQFITFGFACTPLYFVWEKVIGMHDTKSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPASAHMLTYRSASARQNAAEKLPFFIPNWTVMYVVNAFVVVWVLVVGFGFGGWASMTNFIKQVDTFGLFAKCYQCPQKVLPSNHTLHH 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00313 478 Pfam Transmembrane amino acid transporter protein 42 435 IPR013057 -
Cca01g00313 478 PANTHER AUXIN INFLUX TRANSPORTER 2 468 - -
Cca01g00313 478 PANTHER OS05G0424000 PROTEIN-RELATED 2 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00313 Cca-Chr1 3464595 3469769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00313 4 465 Organic Solute Cotransporters AT2G21050 75.758 0.0 746
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00313 K13946 - gmx:100795466 927.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00313 01 3464595 3469769 Cca05g01585 05 35094830 35099796 PCT