LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca01g00312	ATGCTCTCTGCGATACTTCCAATGTCCCTTACGTCCGCCATGTCTGCCAAGGCCTCCTTAGCCTTCTCACGTCGCATGCTTCCTCCCGCCAACCGCCTCTCTCCGCCGTCACTCGCCGCCGTCTCACTCTCACGCGCTCCTCTCACGTTGAGGTGCTCGTCACTCTCGAGCACTTCCCATGTTGAGGAAGAGAGAAAGTTTGTAGATGCTTCAAAGAATGGGAACTTGATTCCTCTCTGTCAGTGCTTATTCTCTGACCAGCTTACTCCTGTTCTTGCATACAGAATTTTGGTTAAGGAGGATGATCGGGAGGCTCCAAGCTTTCTCTTTGAGTCTGCAGAGCCTAGTTTGTCAGGGAGCGTTGGTCGCTATAGTGTTGTGGGAGCACAACCAACGATGGAAGTTGTGGCAAAAGACAATAAGGTTACAATAATTGACCATGAATCTGGGAATTTAACCGAGAAAATTGTTGATGACCCTATGATGATTCCAAGAAAAATCTCAGAGGGTTGGAAACCCTATCTCATTGATGAGCTTCCAGATGCATTCTGTGGTGGTTGGGCAGGTTATTTCTCATATGACACAGTTCGTTATGTGGAAAAGAAAAAGCTACCATTTTCAAAAGCTCCTAAGGATGATAGGAACCTCGCTGACATACATCTAGGCCTCTATGAGAATGTGATTGTGTTTGATCATGTTGAAAAGAAAGCATATGTGATACTTTGGGTGAGGGTTGATCGGTACGCTTCAGCTGAGAGTGCTTACAAGGATGGAATGGAACGATTAGATAAATTAGTGGCAAAATTACAAGATGGCCAACCGCCAAGGCTTGCTCCAGGCTCTGTGGATTTACATACTCAGCAATTTGGTCCACCTTTAGAGAAGTCAAGCATGACAAGAGAAGCATACAAGGAGGCAGTCCTTCAAGCAAAAGAACATATCAAAGCAGGGGATATTTTTCAGATTGTATTAAGTCAGAGATTTGAACGAAGAACATTTGCTGATCCATTTGAAATTTATAGAGCACTGAGAGTTGTGAACCCAAGTCCATATATGTCCTATGTGCAGGCTAGGGGATGTATTCTGGTTGCTTCAAGTCCAGAGATTCTTACGCGCATTAATAAGAATAAGATTGTGAACCGTCCATTGGCTGGGACTTCTAGAAGGGGGAAAACACCTGAAGAAGATGCAAGATTAGAAGCAATACTGCTGAGAGATGAAAAGCAGTGTGCAGAGCATGTCATGTTGGTTGATTTGGGACGCAATGATGTTGGAAAGGTTTCAAAAAGTGGTTCTGTTAAAGTGGAAAAGTTCATGGATATTGAACGATATTCTCATGTCATGCACATAAGTTCAACGGTTACTGGAGAGTTGCAAGAGCATTTGACTAGTTGGGATGTCTTACGAGCTGCATTGCCTGTTGGAACTGTCAGTGGAGCACCTAAGGTGAAGGCGATGGAGTTGATTGATGAGTTAGAGGCAACAAGGAGGGGACCCTATAGTGGAGGATTTGGATACATATCATTCTGTGGTGAGATGGACATTGCTCTTGCTCTGAGGACAATGGTGTTTCCAAGCGGAACCAGGTATGACACAATGTACTCATACAAAGACATTGAATGGCGTCGAGAGTGGGTTGCCTACCTTCAAGCCGGTGCCGGCATAGTCGCCGACAGTGATCCTGACGATGAATACCAAGAGTGCCAGAACAAAGCTGCTGCTCTTGCGCGTTCTATTGACTTGGCTGAGTCTGCATTTGTTCATAAATGGCACAACTGA	1779	0.4508	MLSAILPMSLTSAMSAKASLAFSRRMLPPANRLSPPSLAAVSLSRAPLTLRCSSLSSTSHVEEERKFVDASKNGNLIPLCQCLFSDQLTPVLAYRILVKEDDREAPSFLFESAEPSLSGSVGRYSVVGAQPTMEVVAKDNKVTIIDHESGNLTEKIVDDPMMIPRKISEGWKPYLIDELPDAFCGGWAGYFSYDTVRYVEKKKLPFSKAPKDDRNLADIHLGLYENVIVFDHVEKKAYVILWVRVDRYASAESAYKDGMERLDKLVAKLQDGQPPRLAPGSVDLHTQQFGPPLEKSSMTREAYKEAVLQAKEHIKAGDIFQIVLSQRFERRTFADPFEIYRALRVVNPSPYMSYVQARGCILVASSPEILTRINKNKIVNRPLAGTSRRGKTPEEDARLEAILLRDEKQCAEHVMLVDLGRNDVGKVSKSGSVKVEKFMDIERYSHVMHISSTVTGELQEHLTSWDVLRAALPVGTVSGAPKVKAMELIDELEATRRGPYSGGFGYISFCGEMDIALALRTMVFPSGTRYDTMYSYKDIEWRREWVAYLQAGAGIVADSDPDDEYQECQNKAAALARSIDLAESAFVHKWHN	592

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca01g00312	592	PANTHER	AMINOBENZOATE/ANTHRANILATE SYNTHASE	12	589	IPR019999	GO:0009058
	Cca01g00312	592	Pfam	Anthranilate synthase component I, N terminal region	86	239	IPR006805	GO:0009058
	Cca01g00312	592	PANTHER	ADC SYNTHASE SUPERFAMILY PROTEIN-RELATED	12	589	-	-
	Cca01g00312	592	TIGRFAM	trpE_most: anthranilate synthase component I	85	579	IPR005256	GO:0000162\|GO:0004049
	Cca01g00312	592	Gene3D	Anthranilate synthase	54	588	IPR005801	GO:0009058
	Cca01g00312	592	PRINTS	Anthranilate synthase component I signature	401	414	IPR019999	GO:0009058
	Cca01g00312	592	PRINTS	Anthranilate synthase component I signature	415	428	IPR019999	GO:0009058
	Cca01g00312	592	PRINTS	Anthranilate synthase component I signature	495	509	IPR019999	GO:0009058
	Cca01g00312	592	PRINTS	Anthranilate synthase component I signature	510	524	IPR019999	GO:0009058
	Cca01g00312	592	Pfam	chorismate binding enzyme	300	571	IPR015890	-
	Cca01g00312	592	SUPERFAMILY	ADC synthase	74	583	IPR005801	GO:0009058

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca01g00312	Cca-Chr1	3437172	3441989	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca01g00312	K01657		-	gmx:100790900	1018.45