Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00306 atgaGAATCACGTTAGACCCGAGCTCGGAACCAAGCCCTAGCCGCTCTCCCAAAGACGAACTCGAATGGCTTCCACTCCCCAAACACCCTCTCTTCAccgccaccgcacgccccgcctccaccgccgTTCCCCGCAACCTCCTCGCCTGGGACGGAGCCTCGCGCCTCTACTTCTGGGACGCAAACGCCCGCTGCCTCCACCGCCTCTCTCTTCGCCTCGGCGACCCCGATCCCTCTTCTGTCCTCGCCTCTTCCCCTTCTAAGGTGTTGCAAGCGGACGCGGTGCTCGATTTCGATGTTCACAAGATCTCCATCAACAGGAACGGAACGGCGATACTCCTTTTCGGCTCTGAGAGACTCTGTGTTATGTACCTCTACGGACGCACCTCTAAGAAGGACGTTAACTTGATTTGCAGGACTATTACCGTTGGTTCTCAGACATATTACACTGGTGGCAATGATATTCGTGTGTTACAAGCATTATGGCACCCTTACAGTGATACTCATTTGGGAATCCTTTCTTCTGACTCTGTTTTCCGGCTTTTCAACCTGGCCGTGGCTCCTTTGCAACCAGAGCAAGAATATTATTTACAGCCTGTTGAGCTTGGTAGATCTAGAAATGCCTCATCAGTGTGCCCGGTTGATTTTTCTTTTGGGGGAGACCACTTATGGGACAGGTTTAGTGTTTTTATTTTGTTCAGTGATGGGGCTATCTACGTGCTTTGTCCAGTTGTTCCATTTGGAAGTCTCTTCAAATGTGAGTCTTTGTTAGAAATATACAATGATGTTCATACATTTGGAATACAATCAGCCAACTCTGTTGCGGCGAGTAATTCAAAGCTGGCAATCTCCTGGTTAGAAGCAACATTTCCCGAGTTACAGAACCAAGAAACTGAAGGAGATAACCTGTCTTTTTTAAGAGCTCATGCACATGCTTTATTTGATGCATCCCTTGTCTTGCAGGGACCTCTGCGAAGAGTAGGTCAGGAGGGGAATGAAGATTCAGTTGGTCGAAGTGCAGAATGTGAAGGTCGCACAGTTAGTTTTCTCTACAATTTAGTCAGCAAAGACTCTATTTTGGTGACTGCCTGGAGTGGTGGGCAATTACAGATAGATGCTCTAGCTGATGAGATCCAACCTGTCTGGAGTGTCGGCAGTCCGCCTCGTCTCCGTGTTGATTCCCATGACCAAATTCTTGGCCTTGCTATGATTTGTGAGTCAATTGCAATCAGTCGTCTGTGGAAGCTTGATCACAATGCCTGGTTGGGTAGTCCACCCCCTTTGCTGAGATTGGCTATTGTAGATTTGGCTCTGCCGCGGAGAGCAGAAAGTGGTTATAATATTTCATTATTCATTGATATGCTCATGCCAGAAAGAATATATTCCCTTCATGATGGAGGGATTGACTCAATAGTTTTGCATTTTCTTCCATTTACAAGTCAGACAAATGGCAAGGACGATACAATGAAAACACCATCTGTACACCCTGTTCTAAATACTTGCCAGAGTGGATTCACCTCAGAGCCTTCACTTTGTGGGTTTGTGTCGTTATCAGATTCATTTGGATATTCATGGATTGTAGCTATTACTCTTTCTCAAGAATGTGTTGTGCTTGAGATGAAAAGTTGGAACCTCTTGCTTCCTGTAAGCATTGATACAGAGAAGAAACCCATTCCATCGGAGGGAGAATCAAAAGAGAGAGATATACCAACAATAATCAGCAGAGAACTACTTAGTGGACCCAAGGAGGTACTTGTTCCTCAGGCCTCTCCAAGTTTGCGTTCTGTTGCAGCTGATTCAATTGAAGGCCGATCAACATTACATCAGTATTTCAAGCTGTTTCATGAAACTTATGTGGAATATGGGCACAAGGTGTACCTCGAGCTTAAGCATCATGCACCTCAGTTGAAGAAAATCATTAATGACCAACATTCTCGTTTAGGTGATGCACAACAGAAACTTTTGAAAGTTGAGGAAAGAGAAGCTATATTACAGAAAAGGATAGATCGTGCAGTTCAAATGCACAACTCTTTGGAAGAGCGGAACTTACCTTGTGCTCACAAAAAACCACTGTCCAGAGCAGAGCGACAGTTTAAATCTGAGCTTGACAACTTCAAGGAAGTTGAGTTGGATGCTTTGCATTCTTCTGTTGATGCGCTAGGTGCAAGGCTGAGAAGGCACTTGAAAGCTGCAAAAGCTAATCACCAACAACAGAAAATACCAGGGAAGAAAAGTTATGCTGGAGATAATCAGATATCCATGCTTAAATCATCACTTGAAAAACTTTCTCTTGTAAATACTGAAAATTCAAAGAAAGTTAAACTTGTGGAGTCTACATTGAGAAACAAGGAAAGAAGCAGCAGAGAATCAAGCCTGCCTATGCCCTAA 2388 0.4376 MRITLDPSSEPSPSRSPKDELEWLPLPKHPLFTATARPASTAVPRNLLAWDGASRLYFWDANARCLHRLSLRLGDPDPSSVLASSPSKVLQADAVLDFDVHKISINRNGTAILLFGSERLCVMYLYGRTSKKDVNLICRTITVGSQTYYTGGNDIRVLQALWHPYSDTHLGILSSDSVFRLFNLAVAPLQPEQEYYLQPVELGRSRNASSVCPVDFSFGGDHLWDRFSVFILFSDGAIYVLCPVVPFGSLFKCESLLEIYNDVHTFGIQSANSVAASNSKLAISWLEATFPELQNQETEGDNLSFLRAHAHALFDASLVLQGPLRRVGQEGNEDSVGRSAECEGRTVSFLYNLVSKDSILVTAWSGGQLQIDALADEIQPVWSVGSPPRLRVDSHDQILGLAMICESIAISRLWKLDHNAWLGSPPPLLRLAIVDLALPRRAESGYNISLFIDMLMPERIYSLHDGGIDSIVLHFLPFTSQTNGKDDTMKTPSVHPVLNTCQSGFTSEPSLCGFVSLSDSFGYSWIVAITLSQECVVLEMKSWNLLLPVSIDTEKKPIPSEGESKERDIPTIISRELLSGPKEVLVPQASPSLRSVAADSIEGRSTLHQYFKLFHETYVEYGHKVYLELKHHAPQLKKIINDQHSRLGDAQQKLLKVEEREAILQKRIDRAVQMHNSLEERNLPCAHKKPLSRAERQFKSELDNFKEVELDALHSSVDALGARLRRHLKAAKANHQQQKIPGKKSYAGDNQISMLKSSLEKLSLVNTENSKKVKLVESTLRNKERSSRESSLPMP 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00306 795 Coils Coil 647 667 - -
Cca01g00306 795 PANTHER NUCLEOPORIN NUP84-RELATED 13 785 IPR037700 GO:0000055|GO:0000056|GO:0006913|GO:0017056
Cca01g00306 795 MobiDBLite consensus disorder prediction 1 20 - -
Cca01g00306 795 MobiDBLite consensus disorder prediction 776 795 - -
Cca01g00306 795 Pfam Nuclear pore component 26 207 IPR019321 -
Cca01g00306 795 Coils Coil 691 711 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00306 Cca-Chr1 3296951 3302021 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00306 K14318 - gmx:100801853 1422.91