Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00285 ATGCCAACCCCCGTGCACGCAGCCCGCCAATGCCTAACAGCGGACGCAGCGAGGGCCCTGGACGAGGCAGTAGCGGTGGCCCGCCGCCGAGGACACGCCCAGACGACCTCCCTCCACGCGGTGTCGGCCCTCCTCTCCCTGCCCATCCTCCGGGACGCCTGCTCCCGCGCCCGCAACTGCGCCTACTCCCCACGCCTCCAGTTCAAGGCCCTCGACCTCTGCCTCTCCGTCTCCCTCGACCGCGCCCCCTCCTCCCACAACCACCTCCCCTCCGACCACCACCCTCCCGTCTCCAACTCCCTCATGGCCGCCATCAAGCGCTCCCAGGCCAACCAGCGCCGCCACCCCGATAACTTCCACTTCACTCACCACCAGCAGCCCTTCTCCGTTTCCTCCGTTAAGGTCGAGCTTCAGCATTTGCTACTATCCATCCTCGACGACCCCGTCGTCAGTCGCGTCTTCGCCGAAGCCGGCTTCCGAAGCTCCGACATCAAGCTCGCCATCCTCCGCCCTCTCCGCCCCCGCGCCCCGCCCATTTTCATCTGCAACTTATCCGACcccccgcctccgcctccgccgccgcgccgcttccCTTTTTTCCTCTCCGGCGACGAGAATTTCCGCCGCATCGGGGAGGTCCTCGTGCGGAGCCGGGGGCGGAACCCCTTGCTCCTCGGCGCGTGCGCCGGCGAGGCGCTCCGGAGCTTCGCGGACGCCGTGGAGAAGCGGCGGGAGGGGGCTGTCCCCGTGGAGCTCTCCGGGCTGCGCGTGGTTTGCATTGCGGAGGAGGTGGCGCGTGGGGATTGCGCGGCGGTGGCCGCGCGCGTGGCGGAGGTTGGGGATTTGACGGAGGGGTGTGTGGGACCCGGGGTTGTGGTGAGTTTGGGGGATTTGAAGGATTTTGTGAGGGATGATGAGGTGTGTGAGGGTTTGAGGAGTGTGGTTGGGGAATTGGCGAAGCTTTTGAGGGTTTATTATGATAAGTTTTGGTTGATGGGTGCTGCTGCGAGCTACGAGAGTTACTTGAAATTCGTGGGGAAGTTTCCTTTTGTTGAGAAAGAGTGGGATTTGCAGCTTCTTCCTATTACCTCTGTTAAGCCTTCTGAATCGTATCAGCGTCCCAGGTCCAGCTTAATGGATTCATTTGTGCCATTTGGTGGCTTTTTTTCGTCACAGTCTGATTTGAAAGGTCCTCTGAATGGCTCCTTTTATTGTGTTCCCCACTGTCATCAGTGTGGTGAAAGGTGTGAACACGAAGTGCTTGCTACTTCCAAGGAAAGGTTTTCTTCTTCAGCTGCTGATCCGCTCCAATCGAACTTGCCTCCGTGGTTGCAGGCTGCAGAGTTTGGCACAGCAAAAGGGTTGAATGTGAAGACCAAAGAAGATGGTGTTATGCTTGATGGTAGTGAATCTGCACCACTGCATAAGAACTTAGACAAGATATGCCAGCATCTGCACCAGCAAGATGGAAATACTTTTCCAACTGTTGTGGGGTTTCACTGTGGTGCTGACAAGAAAAAGGAAGATGCTGACAATTGCAGCATCAAAATTACGGACAAATCACCTAATGAATTCATCAATCTCAACTCCAATGTGCCTGTTGGCATGCAAGTGATGCATATGTCACAATCAAGCAGTTCTTTTCCTGCACTTTTCAAGGCAAAGCAGGAGAAATATCCTTCAAAACTCGCTGAAATGTTCCAGAAAGTGGAAGATCATGAGTCAGGAGACCTAAGATCGTGCAACATGTCCAATTCAAGTGTGTGTGATGGTAGTCAAATGTCTCCAACATCTGTAACTTCTGTAACCACTGATCTGGGGTTAGGAATATGCTCTTCTCCTACCAGCAACAAATTGAAGAAACCTTCTATTCAATATACAATGGAGCCTCCAAAGGAAATCCCAAGTCGATTTTCTTCAAACCTCAATTTGGCTGATGGGAATATCTTGAAGTATCCATCCCAGTCTTCATCCTGCTTAAGTTTTGACTACTGTGGGCAAGTTGATGCAAAAAATCCCAAATTTCTTTTTGAAGCTCTTTCCAAGGAGGTAAGCTGGCAAGATGAAGCCTTACGGGCAATCGTCAAAACAATTGTTTGCAGCTCAACAAAAAGGGTCAAGCATCGTGAGGCAAATCAGTCTGGGGATATCTGGATGAATTTTGTTGGACCTGACAGACTTGGTAAAAAGAAAATAGCTGTTTCTTTGGCTGAGTTATTATATGGGAGCCGGGAAAGCTTCATTTTTGTGGATTTAAGTGCTGAACAAAAGAGGGGATTCAATGTGAAATTAAGAGGGAAGACTACCCTTGATTTTATTGTAGGGGAGTGTTGCAGGAAACCCTTGTCTGTGATTTTCCTTGAAAATGTAGACAAGGCAGATATTCTAGCTCAAAATAGTTTGTCTCAAGCCATCAAGACAGGAAAAATTACAGACTCACATGGACGAGAAGTTAGTGTAAACAACACATTGTTTATTTTTTCTTTCTCAGATTACCAAAATAGTTCGATGCCAACAGGGGGACCTTGCAATTATTCTGAGGAAAGAATACTCAGGGCAAAGGGGGGTGGTATCAAGTTAGAAGTTGAACATGTGATTGGAGACACCAGAAGCCAAAGCAACAGTGTAACTAACAATTCAATAGATGCCATTCCCAATCTAAATTTCCTAAACAAACGAAAGTTGATTGGTGATAATGAATTTCGTGACCCCCATTTACTCTCCGAAACAGCTAAAAGGGCCCATACAACATCAAATTGGCTGTTAGATTTGAATCTCCCAGCTGAAGAGAATGAACAGAAACAAACAAGTGATGGAAACTCTGAACATGGCTCAACTCAGAGCCAAAGCCTTTGGTTACAAGATTTGTATGATCTGGTTGATGAAACAGTTGATTTTAAACCTTATGATTTTGATGCACTTGCGGATAGAGTGTTGAAAGTGATCAGAAGTAACTTCAACAAAATTCTTGGATCCGAGTGTTCGTTACAGATCCAGACAGAAGTCATGGACCAATTGCTAGCAGCTCAATATGTTTCAGACAGGGTAACGGAGTTGGAGAACTGGGCGGAGGAAGTTCTTTGTGGAGGATTTACAGAAATACAGAGAAGGTACAACCTCTCTGCTAGTTCTATTGTAAAACTTGCAACATGTCCAGACCAAGCTTATGGTGTACACCTTCCCCCAAGGATAATTTTAGAGTGA 3204 0.4838 MPTPVHAARQCLTADAARALDEAVAVARRRGHAQTTSLHAVSALLSLPILRDACSRARNCAYSPRLQFKALDLCLSVSLDRAPSSHNHLPSDHHPPVSNSLMAAIKRSQANQRRHPDNFHFTHHQQPFSVSSVKVELQHLLLSILDDPVVSRVFAEAGFRSSDIKLAILRPLRPRAPPIFICNLSDPPPPPPPPRRFPFFLSGDENFRRIGEVLVRSRGRNPLLLGACAGEALRSFADAVEKRREGAVPVELSGLRVVCIAEEVARGDCAAVAARVAEVGDLTEGCVGPGVVVSLGDLKDFVRDDEVCEGLRSVVGELAKLLRVYYDKFWLMGAAASYESYLKFVGKFPFVEKEWDLQLLPITSVKPSESYQRPRSSLMDSFVPFGGFFSSQSDLKGPLNGSFYCVPHCHQCGERCEHEVLATSKERFSSSAADPLQSNLPPWLQAAEFGTAKGLNVKTKEDGVMLDGSESAPLHKNLDKICQHLHQQDGNTFPTVVGFHCGADKKKEDADNCSIKITDKSPNEFINLNSNVPVGMQVMHMSQSSSSFPALFKAKQEKYPSKLAEMFQKVEDHESGDLRSCNMSNSSVCDGSQMSPTSVTSVTTDLGLGICSSPTSNKLKKPSIQYTMEPPKEIPSRFSSNLNLADGNILKYPSQSSSCLSFDYCGQVDAKNPKFLFEALSKEVSWQDEALRAIVKTIVCSSTKRVKHREANQSGDIWMNFVGPDRLGKKKIAVSLAELLYGSRESFIFVDLSAEQKRGFNVKLRGKTTLDFIVGECCRKPLSVIFLENVDKADILAQNSLSQAIKTGKITDSHGREVSVNNTLFIFSFSDYQNSSMPTGGPCNYSEERILRAKGGGIKLEVEHVIGDTRSQSNSVTNNSIDAIPNLNFLNKRKLIGDNEFRDPHLLSETAKRAHTTSNWLLDLNLPAEENEQKQTSDGNSEHGSTQSQSLWLQDLYDLVDETVDFKPYDFDALADRVLKVIRSNFNKILGSECSLQIQTEVMDQLLAAQYVSDRVTELENWAEEVLCGGFTEIQRRYNLSASSIVKLATCPDQAYGVHLPPRIILE 1067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00285 1067 CDD AAA 721 820 - -
Cca01g00285 1067 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1066 - -
Cca01g00285 1067 Pfam AAA domain (Cdc48 subfamily) 719 828 IPR003959 GO:0005524|GO:0016887
Cca01g00285 1067 Gene3D - 657 854 IPR027417 -
Cca01g00285 1067 Gene3D - 10 171 IPR036628 -
Cca01g00285 1067 Pfam Clp amino terminal domain, pathogenicity island component 135 169 IPR004176 -
Cca01g00285 1067 ProSiteProfiles Clp repeat (R) domain profile. 8 177 IPR004176 -
Cca01g00285 1067 PANTHER PROTEIN SMAX1-LIKE 8 1 1066 - -
Cca01g00285 1067 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 676 831 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00285 Cca-Chr1 3011214 3016001 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00285 - - ccaj:109805913 2085.46