Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00283 ATGTGTGGCATTACATCAGCTAAAGATGCTGCAATGGCAGCTGAAGCTGGTGCAAATTTTATTGGAATGATCATGTGGCCTAACTCAGAGCGTTCAGTTTCGCTTTCTATTGCAATGGACATATCAAAAGTTGCAAGGGATTATGGAGCAGAGCCTGTGGGTGTATTTGTGGATGATGATTCAGAAACAATTCTAAGAGCTTCTGATGCAGCAAACCTTGAATTTGTGCAGCTTCATGGACAAGGATCTCGGTTAGCTTTTCCATCTTTAGTTCAGGAAAATCGTGTAATATATGTTCTCCATGCAAATGAGGACGGGAGCCTTTTAAACAAAATTTCTGATGAAGAGTGTTCTCTAGTTGATTGGGTTCTTGTAGATAGTGCAAAGGGTGGAAGTGGTAAGGCATTCAATTGGGCCCAGTTGAGACTACCAAAAACCAAAAGCAAGTACGGTTGGCTCTTAGCAGGAGGGATCAATCCTGAGAATGTTTCTGAGGCTCTATCTACACTCAAGCCTGAAGGGGTGGATGTTAGCAGTGGCATTTGTGCATCAGATGGAATCCGGTCGAGAGTAGTTGAACAACATCAAACCGATGACGATATGAGTTGGGCATACATATTGATGCTGATATGGCTTAAAACTGGTTGGAAATTCGACAAGAGTTGTTGCTCATTCTTTGGCAGTACCTGCCTGATCCACAACCTATCACTGTTAGACACCATTAATATAATTTTAAGACATGTTTTGGCTTTTACACATTTTGCCTTTGAAACTAAAACGAACGCTTACATATATCCTCCTCGCCGCAAGAACAGTATTCCCAACTCAGAAACCACAACAATGAAAGGCAAAAGGAACAGTAGCATCTCCATTGCCGTGGTGGTTCTCTCCATGTTCCTCTTTGGGGTCTTCATGTACAACGAGGACGTTAAGTCAATGGCTGAGTTAACATTCTTGAGGCCTAAAGCTCAAGAAATCCAAGAACCAGAAGTAACGGTTTCCAAGAACTCAAGAACTCAGCTGGAGAAAAACCAGGTCGAGGACTCCGAGGAAACTCAAGAACCGATTGACTTGAAAGCCGTTGTGGCTCAGGAGAAAGAGGAGAAGATGATGGTGGAAGAGTATGGGGAAGAAAAAGAAGAGGTTGTGTTGCCTCCAGAAGAGTGTGACTTGTTCACTGGGGAGTGGGTTCTTGATAACGTGACACATCCTTTGTACAAAGAAGAACAATGCGAATTCCTCACTGCACAAGTCACCTGCATGAGGAATGGAAGACGTGATTCTCTCTATCAGAATTGGAGATGGCAGCCAAGAGATTGCTCTTTGCCTAAGTTCAAACCGAAACTTTTGCTTGAGAAGCTTAGAGGGAAGAGGCTAATGTTTGTTGGAGACTCATTGAATAGGAACCAATGGGAATCAATGATTTGTTTGGTCCAGTCTGCTGTACCACAAGGCAAAAAGAGCTTGAACAAGACTGGCTCTCTTTCTATCTTCAGAATTGAGGATTATAATGCTACAGTGGAGTTCTACTGGGCACCGTTCCTTGTAGAGTCAAATTCAGATGATCCAAAGATGCACAGCATATTGAACCGTATTATCATGACTGAATCAATCGAAAAGCATGCTGTTAACTGGAAGAATGTGGACTATCTCATCTTTAACACCTACATATGGTGGATGAATACTGCCACTATGAAAGTCTTACGAGGGTCGTTTAATGAAGGATCAACGGAGTACGACGAAGTCCCTCGACCAATAGCATATGGGAGAGTCCTCAACACGTGGTCTAAATGGGTGGAAGATAACATCGATCCAAATCGCACCAAAGTTTTCTTCTCCAGCATGTCCCCTCTTCATATTAAGAGTGAAGCTTGGAACAACCCAGATGGCATAAAATGTGCTAAAGAGACCACCCCAATTCTCAACATGTCCACAACATTGCAAGTTGGCACGGATCGTAGGCTTTTTGTTGTTGCCAACAATGTGACACAGTCGATGAAGGTGCCAGTGAACTTCCTTAACATCACAACTTTGTCAGAGTTTAGAAAAGATGCACATACCTCTGTTTACACCATACGTCAAGGCAAAATATTAAGTCCAGAACAACAAGCTGATCCTGCTACTTATGCAGATTGTATCCATTGGTGTCTACCTGGGTTACCTGACACGTGGAACGAGTTCCTATACACACGTATCATCTCTCAATCTTGA 2211 0.4288 MCGITSAKDAAMAAEAGANFIGMIMWPNSERSVSLSIAMDISKVARDYGAEPVGVFVDDDSETILRASDAANLEFVQLHGQGSRLAFPSLVQENRVIYVLHANEDGSLLNKISDEECSLVDWVLVDSAKGGSGKAFNWAQLRLPKTKSKYGWLLAGGINPENVSEALSTLKPEGVDVSSGICASDGIRSRVVEQHQTDDDMSWAYILMLIWLKTGWKFDKSCCSFFGSTCLIHNLSLLDTINIILRHVLAFTHFAFETKTNAYIYPPRRKNSIPNSETTTMKGKRNSSISIAVVVLSMFLFGVFMYNEDVKSMAELTFLRPKAQEIQEPEVTVSKNSRTQLEKNQVEDSEETQEPIDLKAVVAQEKEEKMMVEEYGEEKEEVVLPPEECDLFTGEWVLDNVTHPLYKEEQCEFLTAQVTCMRNGRRDSLYQNWRWQPRDCSLPKFKPKLLLEKLRGKRLMFVGDSLNRNQWESMICLVQSAVPQGKKSLNKTGSLSIFRIEDYNATVEFYWAPFLVESNSDDPKMHSILNRIIMTESIEKHAVNWKNVDYLIFNTYIWWMNTATMKVLRGSFNEGSTEYDEVPRPIAYGRVLNTWSKWVEDNIDPNRTKVFFSSMSPLHIKSEAWNNPDGIKCAKETTPILNMSTTLQVGTDRRLFVVANNVTQSMKVPVNFLNITTLSEFRKDAHTSVYTIRQGKILSPEQQADPATYADCIHWCLPGLPDTWNEFLYTRIISQS 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00283 736 Pfam PMR5 N terminal Domain 387 440 IPR025846 -
Cca01g00283 736 Hamap N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 2 190 IPR001240 GO:0004640|GO:0006568
Cca01g00283 736 PANTHER PMR5/CAS1P GDSL/SGNH-LIKE ACYL-ESTERASE FAMILY PROTEIN 372 734 - -
Cca01g00283 736 Gene3D Aldolase class I 1 192 IPR013785 -
Cca01g00283 736 CDD PRAI 2 187 IPR001240 GO:0004640|GO:0006568
Cca01g00283 736 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 442 730 IPR026057 GO:0016740
Cca01g00283 736 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 372 734 IPR029962 GO:0016413
Cca01g00283 736 Pfam N-(5'phosphoribosyl)anthranilate (PRA) isomerase 2 188 IPR001240 GO:0004640|GO:0006568
Cca01g00283 736 SUPERFAMILY Ribulose-phoshate binding barrel 1 189 IPR011060 -
Cca01g00283 736 MobiDBLite consensus disorder prediction 329 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00283 Cca-Chr1 2966971 2974757 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00283 - - gmx:100785597 830.091