Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00273 ATGCTTCACTCCACTTCGCTTCTTCCTCATAATAACCGCTTCGTCTTCTCCTTCCGCTTAAAACCTTCTTATTCTTATTCCAACCCTCTCTCTTTCTCCAACTTCCTCTCTCTTCAATCGTCTTCGCAATCCTCATGTTGCCGCGTCGCTCGAATCTCCACCGATACCTTGGAGGTCTcgccgccgccgccgccgcccttccacttccgccgcGAAATCGCCAGGCTCGCCGCGCTCCGCGACAGGCTCGCCGCGTGCGCTTCTCTCGACCAGAGACTCCGAGTGATTGACGCCGATTCCAGAGTGAGGCGCTTCTTCGGCTCGCGCCGCGGCCTCGCTAGGGTTCTGGCGTCGCTCCGGATGAGCTCCGACCAGCTGTTCCTGCTCAAGTGCTTGGTCGCCGCGCGGCAGGAGCACGTGCTGCGTTTGGACGAAACAGAATCGCTGGAAGCTTCCGCCGCCGCGGATAGTGCCGTGAAGAGCGCGCTCTACGCTCTGGCGGAGATGATTGAGAATTTGGATTCGTATAACGGCAATGCTGGTGCGGGTTTGGGGATGGCTTTGGAGGATCACGAGATTCGGGAGTTGAATAAGTTATTAGAGACGTTGGCAGAAATTGAGCGCTTCTATGACTGTATTGGAGGAATTATTGGATATCAGATAACAGTACTGGAACTTCTTGTTGAAGAATCGTTTGAGAGGCAGAATATAAACTGGTCCCACCACAGGCATGATTTGAATGAAAGCCAAATATTGGGAATTAATGCACCTAATGGGCTTAACCTCTCTGAAGACACAGAATATGCATCTCAAGCAGCTCTATGGGGTATAGAGGGTTTGCCAGACCTAGGTGAAATTTATCCTCTGGGAGGTTCTGCCGACAGGCTTGGTTTGGTTGATCCTAAGACAGGTGAATGCCTACCTGCTGCAATGCTACCATATTGTGGAAGGACTTTGTTGGAAGGCCTTATACGAGATCTTCAGGCTAGAGAATTCTTGTACTTCAAGCTATATGGGAAGCAGTGCATCACCCCTGTTGCAATTATGACAAGTTCTGCAAAGAACAACCACAAACATGTCACTTCTCTGTGTGAAAGACTTTCGTGGTTTGGAAGAGGTCGATCAACTTTTCAACTTTTTGAGCAGCCTCTTGTTCCAGTTGTTGGTGCAGAAGAAGGTCAGTGGCTAGTCACTAAACCATTCAGTCCCTTGAGCAAGCCTGGTGGCCATGGTGTCATATGGAAACTAGCTCATGACAAAGGCATCTTCAAATGGTTTTATTGTCAAGGAAGAAAAGGTGCAACTGTGCGCCAAGTCAGTAATGTTGTCGCTGCTACAGATTTAACCCTCCTGGCCTTGGCAGGGATAGGTTTACGTCAAGGAAAGAAACTAGGTTTTGCATCTTGTAAGCGGATCTTGGGTGCCACAGAAGGAATTAATGTGCTGATGGAGAAGAAAGGTCTTCACGGGAACTGGGAATATGGTGTGTCTTGTATTGAATACACCGAGTTTGACAAGTTTGGAATTACTGCTGGACCTCTTGCTCCAAAAAGCTTGCAGGCAGAGTTCCCAGCCAATACAAACATCTTATATGTTGATTTAGCTTCTGCGGAGCTAGTTGGATCAAGTAAGAGCGAGAATAGTTTACCTGGAATGGTGCTAAATACTAGAAAGTCAATAGTCTACACAGATCAGTTTGGAAGATGTCATAGTGTATCTGGCGGCAGGCTTGAGTGCACAATGCAAAATATAGCTGACAATTATTCCAATTCATATTCATCCAGATGTTATAATGATGTAGAAGATAAGCTAGATACTTTTATTGTGTATAATGAAAGAAGAAGGGTTACCTCCTCAGCTAAGAAAAAAAGAAGACATGGCGACAAGTCTTTACATCAGACACCTGATGGCGCTCTGTTGGATATCTTACGAAATGCTCATGATCTTCTTTCTCAATGTGATATAAGGCTTCCTAAGATTAAAGCTAATGAGAACTATATTGATTCGGGACCACCATTTCTCATCCTTCTGCATCCTGCTCTTGGTCCTCTTTGGGAAGTCACAAAGCAAAAATTTAATGGTGGTTCCATATCAGAGGGCTCTGAGTTACAAATAGAGGTTGCAGAGTTTTTTTGGAGGAATGTTCAGCTCGATGGAAGCCTGGTCATAGTTGCTGATAATGTTATGGGCTCAATGAAGATTAATGAGAGTGGTGAATCCATACTACATTACGGGCAAAGGTGTGGAAGATGTAAATTGCAAAATGTTAAGGTATTGAACAAGGGAATTGATTGGAAATATGGTGGGAACATATACTGGAAACACGATGTACAGCGATCCGAGGTGCTGCAGATCATACTGCATGGAAATGCTGAATTTGAGGCTACTGATGTTGTCTTACAGGGGAATCATGTCTTTGAAGTTCCAGATGGCTTCAAAATGAAAATCATGCCAGGAAGCCCAGGTTTCTTCAACTTTAGAAATTCATTTTCTTGGTTTTGTTGCTTTAGATGCCTGTTGTAG 2523 0.4447 MLHSTSLLPHNNRFVFSFRLKPSYSYSNPLSFSNFLSLQSSSQSSCCRVARISTDTLEVSPPPPPPFHFRREIARLAALRDRLAACASLDQRLRVIDADSRVRRFFGSRRGLARVLASLRMSSDQLFLLKCLVAARQEHVLRLDETESLEASAAADSAVKSALYALAEMIENLDSYNGNAGAGLGMALEDHEIRELNKLLETLAEIERFYDCIGGIIGYQITVLELLVEESFERQNINWSHHRHDLNESQILGINAPNGLNLSEDTEYASQAALWGIEGLPDLGEIYPLGGSADRLGLVDPKTGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHKHVTSLCERLSWFGRGRSTFQLFEQPLVPVVGAEEGQWLVTKPFSPLSKPGGHGVIWKLAHDKGIFKWFYCQGRKGATVRQVSNVVAATDLTLLALAGIGLRQGKKLGFASCKRILGATEGINVLMEKKGLHGNWEYGVSCIEYTEFDKFGITAGPLAPKSLQAEFPANTNILYVDLASAELVGSSKSENSLPGMVLNTRKSIVYTDQFGRCHSVSGGRLECTMQNIADNYSNSYSSRCYNDVEDKLDTFIVYNERRRVTSSAKKKRRHGDKSLHQTPDGALLDILRNAHDLLSQCDIRLPKIKANENYIDSGPPFLILLHPALGPLWEVTKQKFNGGSISEGSELQIEVAEFFWRNVQLDGSLVIVADNVMGSMKINESGESILHYGQRCGRCKLQNVKVLNKGIDWKYGGNIYWKHDVQRSEVLQIILHGNAEFEATDVVLQGNHVFEVPDGFKMKIMPGSPGFFNFRNSFSWFCCFRCLL 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00273 840 SUPERFAMILY Nucleotide-diphospho-sugar transferases 126 729 IPR029044 -
Cca01g00273 840 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 186 644 IPR029044 -
Cca01g00273 840 PANTHER UTP--GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE 3, CHLOROPLASTIC 27 824 - -
Cca01g00273 840 PANTHER UDP- GLUCOSE PYROPHOSPHORYLASE 27 824 IPR039741 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00273 K22920 - gmx:100788781 1404.04