Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00271 ATGGCGAAGGAGGATGTGGATGAACTCTTATCTTCCTTGATCTCAGAAATCCACTCCTACACCGGCAAAGACCCTCTTCTTCCCTGGCTTCGCGCCATCCGAAAGATGAAGGACACTCTTCCTCCCAAAACCCTAAAGGAAAAACTCCCCCCGTTCTTGCAGAAAATCGCCCACACCTTCGAGCTCGATCGACGTTACAGAAACGACATGCGCTATCTTCGCGTTTGGCTCCACCTGATGGATTTTGTGGAGGATCCGAGAGTGCTTTTGAGAACGATGGAGGTGAATTGCATTGGCACAAAGCGTTGTCAATTCTACCAAGCATATGCTCTTTACTACGAGAAGAGCAAGAAGTATGATGAGGCAGAGAAAATGTACCATCTCGGAGTGAAGAACCTTGCAGAGCCTCTTGACGACTTGCAGAAATCATATGAACAGTTTCTTCAACGCAAGGAGCGAAGAAATAATAAGAGAATCCAGCATCAGGAAGGAAAAGTTGCCAGGAAGCCTCTGTCTTCAAATACCTTCCCTTCTCTTGACAAAAAGACTGAGGGAAGCAAAAGCAATGGAGCATGCTGTGTTGAGGGTGTGCAAAAGGGACCCCAAATTGAGAATTATGCAACTAAAAGTGAAGCTGATGATCAAAACGTAAGGACTAAGAAGGATGAGTGCAAAAGATTTCGTGGTGATGATACAGTTGTAGTTAAGTTTGTTGACACTGCCATGGTAGGAAAGTCTGAAGCAGAAGATGCATGCCATCATGGATTAGTGGATCCTACAATAAATATGAAGGAAGCCATGAATGCCATAAACAGCATGTTCCGGGAGCCATTAGAGACTGTTCCATTAGGCAGGAAATCACTTAAAAACCATTCAAAAGAAGTTCATTGTACAAAGAACGAGTTTGAGGTTTTTGTTGATGAAAACTTGGATCATGGAATCAAACCATCAGGTTCCTTGTCACTTCAGAACAGGACTGAAGCTAGCCAACCTCACCAAGAACCGTTCCAGATATATATTGATGACGAAGAACATTTGAATACGAATGATGTGAATGTGAATTTGTCTGAAGGTTGTACTTCATCAGCTTCACAACCAAATGGCTTTGTTTTTCTTCGCCCCAAGGATATTCCTTCTGAAAAGTCTAGTAAAATGGATGCTGAAAGCTCTCGTAATTCAAAGTTCAGAGAGGATACAGTTGTTCGCAGATTTGTTGGTTCCACCATTTTGGATGAACCAGAGGTGGAAAATGTTTGCCACCATGGATTAGTAGACCCCACCATCAACTTGAAGGAAGCTATGGATGACATAAATAACATGTTCGGGAAGCCAATAGATTTTGTTAGGAAAAGAAGATCCACCAAGAAGGAGAAAGCACCCCAAAGCAATAGGGGAAATGACTTTGGTGGGTTTTCAATCCTTGCTGATGATGACCTCCCGGAACAAAAACTTCCACCACCACCAGCACCAAAATTGCCAGGAAAGTCAAAGGAGTCTGATTTGTTTGAGCCAACTCTCCTCACAAAGGAAGCCATGGACGATATAAACAAGATGTTTAACATGCCTCTGAATTTTTAG 1578 0.4297 MAKEDVDELLSSLISEIHSYTGKDPLLPWLRAIRKMKDTLPPKTLKEKLPPFLQKIAHTFELDRRYRNDMRYLRVWLHLMDFVEDPRVLLRTMEVNCIGTKRCQFYQAYALYYEKSKKYDEAEKMYHLGVKNLAEPLDDLQKSYEQFLQRKERRNNKRIQHQEGKVARKPLSSNTFPSLDKKTEGSKSNGACCVEGVQKGPQIENYATKSEADDQNVRTKKDECKRFRGDDTVVVKFVDTAMVGKSEAEDACHHGLVDPTINMKEAMNAINSMFREPLETVPLGRKSLKNHSKEVHCTKNEFEVFVDENLDHGIKPSGSLSLQNRTEASQPHQEPFQIYIDDEEHLNTNDVNVNLSEGCTSSASQPNGFVFLRPKDIPSEKSSKMDAESSRNSKFREDTVVRRFVGSTILDEPEVENVCHHGLVDPTINLKEAMDDINNMFGKPIDFVRKRRSTKKEKAPQSNRGNDFGGFSILADDDLPEQKLPPPPAPKLPGKSKESDLFEPTLLTKEAMDDINKMFNMPLNF 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00271 525 ProSiteProfiles BUB1 N-terminal domain profile. 13 169 IPR013212 -
Cca01g00271 525 MobiDBLite consensus disorder prediction 167 185 - -
Cca01g00271 525 MobiDBLite consensus disorder prediction 449 500 - -
Cca01g00271 525 PANTHER OS11G0128700 PROTEIN 5 525 - -
Cca01g00271 525 SMART mad3_bub1_i 6 130 IPR013212 -
Cca01g00271 525 MobiDBLite consensus disorder prediction 152 188 - -
Cca01g00271 525 Gene3D - 11 168 - -
Cca01g00271 525 PANTHER MITOTIC CHECKPOINT SERINE/THREONINE-PROTEIN KINASE BUB1 5 525 IPR015661 GO:0007094
Cca01g00271 525 Pfam Mad3/BUB1 homology region 1 13 130 IPR013212 -
Cca01g00271 525 Coils Coil 137 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00271 Cca-Chr1 2858342 2861275 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00271 - - gmx:100806627 882.093