Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00260 ATGATTCCACGGCTTCTCGGAGCCTATATAAATCGCCAATTCTTAATCAACGTTCGACACATCATACGTTTCTTCATTGCAGAAATTCAGACACTGTGGCAATTCGTGACCATGTCCTACCCCAAATCCGAGTCAGTGTCTGGACCCTCTGATTCGGAAGTTCCACCGACTGAACCCTCTGTGCCCATTTCTTATCCAATCAAAACCCTTCAGGAGTTGGAGTCTCGCTCCTATTTTCAGTCCTTTCACTACCCTTTCAACAAAGCTTCGGTTCCTATCAATGGGAATGGGAATTCTTCTTCGTTGCCCAATAGGCGCAGATTGCTTGTGTGCCATGACATGGCTGGCGGCTACTTGGATGATAAGTGGATTCAAGGTGGCACTAACCCCGATGCTTATGCCATTTGGCATTGGCATTTGATCGATGTCTTTGTTTACTTTTCACACACTCTCGTTACTCTTCCCCCTCCTTCATGGACTAACGCAGCTCATCGCCATGGTGTTAAGGTGTTGGGGACCTTCATCACTGAGTGGGATGAGGGAAGGGCTGCCTGTGATACACTGCTTTCAACAAAGGAAACTGCACAGATGTATGCAGAACGTCTGGCAGAGCTTGCTGCTGCGTTAGGCTTCGATGGGTGGCTAATAAATATGGAAGTAAATTTGGATCAGGATCAAATTTTTAATTTGAAAGAGTTTGTAGACCATTTATCATTAACAATGCATTCTTCTGTGCCTGGATCGTTAGTGCTATGGTATGACAGCGTTACAGTTGATGGTAAATTGAATTGGCAAGATCAATTAAATGAACATAATAAACCATTTTTTGATATATGTGATGGAATATTTGTGAACTATACATGGAAGGAAGACTATCCAAGGCTCTCTGCTTCTGTTGCCAGTGATCGGAAGTTCGATGTGTACATGGGAATTGATGTGTTTGGAAGGAACACATATGGTGGTGGACAGTGGAATGTAAATGTTGCTCTTGATGTACTAAGAAAGAATGATGTCTCTGCTGCAATATTTGCTCCTGGATGGATCCATGAGACAAAACAACCACCAGATTTTGCAACTGCTCAGAATAGTTGGTGGGGTCTTGTGGAAAAGTCATGGGGAGTACCGCAAAAATTTCCTGGAGTACTACCATTCTACACTAATTTTGATCAGGGACGTGGTTATCATATTTCAGTTGATGGTGACAATGTATCAGATGCTAGCTGGTGCAACATGTCTTGCCAAGGCTTTCAGCCACTCCTTGGGTCTGCTGATCCTACAAATTCTATTCAAGTTTCTGTAGACTTGAAGGAAGCATCATATAATGGAGGGGGAAACATTACATTCAGAGGATCTCTTGAAGATCAAACTTACTTTGAGAGGAAAATCTTTCAAGGAGAGTTTCTTTTGAGCGAGTTGCCTATCCACTTCATTTATTCTGTTAAATCAGATGGCAATTCTTCATTGGGACTTAAGCTCGAGTTCACTTCTACCAGCAACCAAAGAGCGTCTATACTTCTCACATCCCATGCAGTGAATCATTTCTCAAGCAATTTCAGCAAAGTAATCATGACTCGTGAACACAAGGGATTATCCTCTGGTTGGGTTATAAATGAAGGTGTAGTTGCAATGAATGGATACACTTTATCAGAAATACATGCAGTGTGCTATAGATCAGATTCACCATTCAATGAAATACGATATCAACACAGATCAACTGGCAATGATGAAACTCTGGCTCCCCCATCAAATTATTTTGCACTTCTTGGTCATATCACAATGAAGACTTCTGACTATAAGTCAGATTTTCCTATGTCTTCTTCTTGGCAAGTTGAAGGTAGCTGCATAAAATGGACATCAGACCCTCTGGGTTCAAAGACCCTTGATGTTAAAATTTCTTGGGAACTGAAAAATGGAAATAATTATCTATTTCTAAAATACAACTTGTACTTGGTGAAATTATCAAAACAAGCACGTACAACATTTGAGGATGTGAAGGAGTACCTCGGAGTAGCAGAAGTAAACTGTTTTTATGTTTCTGACCTCGATATTCCTTCAGACACTTCTAGTCTCAAATTTATAATACAAGTTTGTGGTGTAGATGGGACAATTCAGGAACTGGATGAGTCTCCATATTATCAATTGGAGGTTGAAGGTTCCTAA 2160 0.4102 MIPRLLGAYINRQFLINVRHIIRFFIAEIQTLWQFVTMSYPKSESVSGPSDSEVPPTEPSVPISYPIKTLQELESRSYFQSFHYPFNKASVPINGNGNSSSLPNRRRLLVCHDMAGGYLDDKWIQGGTNPDAYAIWHWHLIDVFVYFSHTLVTLPPPSWTNAAHRHGVKVLGTFITEWDEGRAACDTLLSTKETAQMYAERLAELAAALGFDGWLINMEVNLDQDQIFNLKEFVDHLSLTMHSSVPGSLVLWYDSVTVDGKLNWQDQLNEHNKPFFDICDGIFVNYTWKEDYPRLSASVASDRKFDVYMGIDVFGRNTYGGGQWNVNVALDVLRKNDVSAAIFAPGWIHETKQPPDFATAQNSWWGLVEKSWGVPQKFPGVLPFYTNFDQGRGYHISVDGDNVSDASWCNMSCQGFQPLLGSADPTNSIQVSVDLKEASYNGGGNITFRGSLEDQTYFERKIFQGEFLLSELPIHFIYSVKSDGNSSLGLKLEFTSTSNQRASILLTSHAVNHFSSNFSKVIMTREHKGLSSGWVINEGVVAMNGYTLSEIHAVCYRSDSPFNEIRYQHRSTGNDETLAPPSNYFALLGHITMKTSDYKSDFPMSSSWQVEGSCIKWTSDPLGSKTLDVKISWELKNGNNYLFLKYNLYLVKLSKQARTTFEDVKEYLGVAEVNCFYVSDLDIPSDTSSLKFIIQVCGVDGTIQELDESPYYQLEVEGS 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00260 719 CDD GH85_ENGase 109 419 - -
Cca01g00260 719 PANTHER ENDO BETA N-ACETYLGLUCOSAMINIDASE 4 718 IPR032979 GO:0033925
Cca01g00260 719 Pfam Glycosyl hydrolase family 85 118 395 IPR005201 GO:0005737|GO:0033925
Cca01g00260 719 PANTHER BETA N-ACETYLGLUCOSAMINIDASE, PUTATIVE-RELATED 4 718 - -
Cca01g00260 719 Gene3D Glycosidases 57 381 - -
Cca01g00260 719 Gene3D - 382 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00260 Cca-Chr1 2733788 2741233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00260 57 717 Glycoside Hydrolase AT5G05460 56.334 0.0 743
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00260 K01227 - gmx:100804658 1235.71