Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00252 ATGGAACCTGTCAAGTTCATTCTCAACAATGCCAAATACTCCTCCATCTTCTTAGCTATCTTTGTGCTCTTAGcttcagcaaatgccaaagttcacgagcatgagtttgttgttgaagcaactccagtgaagaggctgtgcaaaacccacaacactatcaccgtgaatgggcaatacccgggcccaacgttggagattaacaatggagacactttggtcgtcaaagtcactaacaaagctcgttacaatctgaccattcattgGCACGGTGTTAGGCAAATGAGAACAGGATGGGCTGATGGACCAGAATTTGTGACTCAATGCCCTATTCGTCCTGGAGGAAGTTACACCTACCGTTTCACCGTCCAAGGACAAGAAGGCACACTTTGGTGGCACGCTCATAGTTCATGGTTAAGGGCCACAGTTTATGGTGCCCTAATCATTCGTCCTAGGGAAGGAGAACCCTACCCTTTCCCCAAGCCAAAGCACGAGACACCCATTCTTCTTGGGGAATGGTGGGACGCAAACCCTATCGATGTTGTGAGGCAGGCCACACGAACAGGGGGAGCTCCAAACGTGTCTGATGCATACACCATCAATGGTCAACCTGGTGATCTTTACAAGTGCTCTAGCAAAGACACGACCATCGTGCCAATATACGCCGGCGAAACGAACCTCCTCCGTGTGATAAACGCTGCACTGAACCAACCCCTCTTCTTCACGGTGGCAAACCACAAACTCACAGTGGTTGGCGCCGACGCCTCCTACCTGAAACCCTTCACCACCAAAGTCCTCATGCTGGGCCCCGGCCAAACCACCGACGTCCTCCTCACCGCCGACCAGCCCCCCTCCCGCTACTACATCGCCGCCCGCGCCTACCAGTCGGCCCAAAACGCCGCCTTCGAcaacaccaccacgaccgccatcctccactacaaccgccaccctcgccctcaccaccaccaccacaccaccaAAACGAAACCCCTCATGCCCCCTCTCCCCGCATTCAACGACACCAACACCGTCACAGCCTTCAGCAAAAGGTTCCGAAGCCCTAGAAGAGTCGAAGTCCCCGCCGAAGTGGACGAAAGCCTCTTCTTCACGGTGGGCCTGGGCCTGAACAAGTGCCCCAAAAGCTTCAACAAAAGCCAACGGTGCCAGGGGCCCAACGGAACCCGATTCACGGCCAGCATCAACAACGTCTCCTTCGTGCTCCCCAACAACGTCTCCATCTTGCAGGCGCACTACGAAGCCATCCCCGGCGTCTTCACCACCGACTTTCCCGCGAGGCCGCCGGTGAAGTTCGACTACACCGGAAACGTGAGCCGGTCGCTGTGGCAACCTCTTCCCGGGACGAAGGCGCATAAGCTGAAGTTTGGGTCGAGGGTGGAGATTGTGCTGCAGGATACTAGCATTGTCACTCCTGAGAACCACCCCATTCATCTTCATGGCTATGATTTCTACATCGTTGCCGAAGGGTTCGGGAATTTTGACGCTAAGAAAGATACCAAGAAATTCAACCTTGTTGATCCACCTTTGAGGAACACTGTGGCTGTGCCTGTAAATGGATGGGCAGTTATTCGATTTGTCGCTGATAACCCGGGTGCCTGGCTTTTGCATTGTCACTTGGACGTTCACATTGGCTGGGGTTTGGCCACGGTATTGTTGGTTGAGAACGGAGTTGGGAAATTGCAATCCATAGAGCCCCCTCCTCTGGATCTTCCTCTTTGTTAG 1737 0.4594 MEPVKFILNNAKYSSIFLAIFVLLASANAKVHEHEFVVEATPVKRLCKTHNTITVNGQYPGPTLEINNGDTLVVKVTNKARYNLTIHWHGVRQMRTGWADGPEFVTQCPIRPGGSYTYRFTVQGQEGTLWWHAHSSWLRATVYGALIIRPREGEPYPFPKPKHETPILLGEWWDANPIDVVRQATRTGGAPNVSDAYTINGQPGDLYKCSSKDTTIVPIYAGETNLLRVINAALNQPLFFTVANHKLTVVGADASYLKPFTTKVLMLGPGQTTDVLLTADQPPSRYYIAARAYQSAQNAAFDNTTTTAILHYNRHPRPHHHHHTTKTKPLMPPLPAFNDTNTVTAFSKRFRSPRRVEVPAEVDESLFFTVGLGLNKCPKSFNKSQRCQGPNGTRFTASINNVSFVLPNNVSILQAHYEAIPGVFTTDFPARPPVKFDYTGNVSRSLWQPLPGTKAHKLKFGSRVEIVLQDTSIVTPENHPIHLHGYDFYIVAEGFGNFDAKKDTKKFNLVDPPLRNTVAVPVNGWAVIRFVADNPGAWLLHCHLDVHIGWGLATVLLVENGVGKLQSIEPPPLDLPLC 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00252 578 ProSitePatterns Multicopper oxidases signature 1. 536 556 IPR033138 -
Cca01g00252 578 Gene3D - 20 150 IPR008972 -
Cca01g00252 578 PANTHER LACCASE 11 578 - -
Cca01g00252 578 SUPERFAMILY Cupredoxins 357 578 IPR008972 -
Cca01g00252 578 Pfam Multicopper oxidase 428 560 IPR011706 GO:0005507|GO:0016491
Cca01g00252 578 Gene3D - 162 355 IPR008972 -
Cca01g00252 578 Pfam Multicopper oxidase 164 313 IPR001117 -
Cca01g00252 578 CDD CuRO_1_LCC_plant 34 150 IPR034288 GO:0005507
Cca01g00252 578 CDD CuRO_3_LCC_plant 423 561 IPR034289 GO:0005507
Cca01g00252 578 Gene3D - 380 578 IPR008972 -
Cca01g00252 578 SUPERFAMILY Cupredoxins 27 177 IPR008972 -
Cca01g00252 578 ProSitePatterns Multicopper oxidases signature 2. 541 552 IPR002355 GO:0005507
Cca01g00252 578 Pfam Multicopper oxidase 38 152 IPR011707 GO:0005507
Cca01g00252 578 SUPERFAMILY Cupredoxins 158 353 IPR008972 -
Cca01g00252 578 TIGRFAM laccase: laccase 29 578 IPR017761 GO:0046274|GO:0048046|GO:0052716
Cca01g00252 578 CDD CuRO_2_LCC_plant 166 312 IPR034285 -
Cca01g00252 578 PANTHER MULTI-COPPER OXIDASE 11 578 IPR045087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00252 Cca-Chr1 2616219 2619732 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00252 K05909 - gmx:547704 1081.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00252 01 2616219 2619732 Cca05g01636 05 35807110 35810392 PCT