Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00248 ATGCTAGTTTATGTGTGGCTGTGGCTGTGCCACAAACATTTGTCAATGATTCAAGCCAAAATCAGTATGAAGCCCCACACACAGCCTTCTTCCCTCACGCACGTGCCTTACTTCCGCTCCACCACTGCCGCACGTGCCACTCCTCATGACGCCGCCGCCGCCCTCCATTTCCGCCGCGCCTCGCCTGTCAAGCGCCGCCGCATCAACCTATCCGTCCGCCATTCCAGCCGCGTCACCGCGGCTTCCCAGCCGTGCCGTTCCAACGGCGACGAGCCTCCTGCTCGGAGCAGCCGGCGAGGGGTTCTGATGGCGCCGTTCCTGGCCGCCGGCGCGTCGATTCTCCTCTCGGCGGCGGCGAGAGCAGAGGACAAGTCGGCGGAGCCTCCTCCGGCGCCGAAGCCGGAGGAGGAGGAAGTGATAACGTCTCGGATTTACGACGCGGCGGTGATAGGAGAACCGTTGGCGATAGGAAAAGAGAAGGGGAAAGTGTGGGAGAAGTTGATAAACGCTCGGGTGGTGTATTTAGGGGAAGCGGAGCAGGTTCCCGTTCGAGACGATAGGGAATTGGAGCTTGAGATTGTGAAGAATTTGCAGAGGCGATGCGTGGAGAAGGAGAAGCGTTTGTCTCTGGCGCTCGAAGTCTTTCCCTCTAATCTTCAGGAACCGCTCAATCAGTATATGGATAAGAAGATAGATGGAGAAACCTTGAAGTCTTATACGATACATTGGCCTCCTCAAAGATGGCAGGAGTATGAACCTATTCTGAGCTACTGTCGCGAAAATGGAATTCATCTTGTTGCTTGTGGTACTCCACTGAAGATCTTGAGAACTGTCCAAGCAGAAGGAATTCGTGGCCTTACAAAGGATGAACGTAAACTATATGCACCTCCAGCTGGTTCAGGCTTCGTATCAGGCTTTACTTCTGTCTCACGTAGATCTTCAGTTGATAGTACTCAAAATCTGTCTATTCCTTTTGGTCCAAGCTCATACCTTGCTGCACAGGCTAAAGTAGTTGATGAGTATTCAATGTCCCAGATTATCTTACAAAACGTACTTGATGGAGGGGCCACCGGGATGTTAATAGTTGTGACTGGTGCAAGCCATGTTACATATGGATCTAGAGGAACTGGAGTGCCAGCAAGAATTTCAAGAAAAATACAAAAGAAAAACCAAGTAGTTATATTACTTGACCCTGAAAGACAATTCATTCGCAGAGAGGGAGAAGTTCCTGTTGCTGATTTTTTGTGGTATTCTGCTGCCAGACCCTGCAGTAGAAATTGCTTTGACCGTGCTGAGATTGCTCGGGTTATGAATGCTGCTGGGCGGAGGCGAGATGCCCTCCCACAGGATCTCCAAAAGGGAATTGATCTTGGTTTAGTATCACCAGAGGTGTTGCAGAACTTTTTTGATCTAGAGAAGTATCCTCTAATTTCAGAACTCACTCACCGTTTCCAGGGTTTCAGGGAAAGATTGTTGGCAGATCCCAAATTCTTGCATAGATTGGCCATAGAAGAAGCTATATCAATAACAACAACATTATTGGCACAGTATGAAAAGCGGAAAGAAAATTTTTTCCAAGAGATTGACTATGTTATTACAGACACTGTCAGAGGATCAGTTGTTGATTTCTTTACTGTGTGGCTTCCTGCACCAACTTTGTCATTCCTTTCATATGCTGATGAGATGAATGCACCTGACAACGTTGGTTCTCTAATGGGACTTCTTGGCTCCATCCCAGACAATGCATTTCAAAAGAATCCAGCAGGAACAAACTGGAATCTCAATCATAGAGTTGCATCAGTTGTATTTGGTGGGCTAAAACTTGCTAGTGTTGGATTTATTTCAAGCTTAGGAGCTGTGGCTTCATCAAATTCTCTATATGCAATTCGTAAATACCTTAATCCAGAAGTTGTCACTGAACAACGGATTATGAGGTCACCAATACTCAAAACAGCAGTTGTATATGCTTGCTTTCTCGGAGTATCTGCAAATCTCCGTTATCAGATAATTGCTGGGATCGTGGAGCATCGAATTTCTGAACAGTTTTCTTCCCAAACATTCCTTGTAAATATGCTTTCTTTTGTAGCTCGGACAATCAATTCCTATTGGGGAACTCAGCAATGGATTGACCTAGCGCGCTTTACTGGCCTTCAAGTTAGAAAGACAGAGTTACCGACATCAGATTCTCCGAATCATGCTGCAATTTTATGCAACGAAACAGAAGAAGCTAGCATTGATGAGATAAAAAATGAATGA 2256 0.4668 MLVYVWLWLCHKHLSMIQAKISMKPHTQPSSLTHVPYFRSTTAARATPHDAAAALHFRRASPVKRRRINLSVRHSSRVTAASQPCRSNGDEPPARSSRRGVLMAPFLAAGASILLSAAARAEDKSAEPPPAPKPEEEEVITSRIYDAAVIGEPLAIGKEKGKVWEKLINARVVYLGEAEQVPVRDDRELELEIVKNLQRRCVEKEKRLSLALEVFPSNLQEPLNQYMDKKIDGETLKSYTIHWPPQRWQEYEPILSYCRENGIHLVACGTPLKILRTVQAEGIRGLTKDERKLYAPPAGSGFVSGFTSVSRRSSVDSTQNLSIPFGPSSYLAAQAKVVDEYSMSQIILQNVLDGGATGMLIVVTGASHVTYGSRGTGVPARISRKIQKKNQVVILLDPERQFIRREGEVPVADFLWYSAARPCSRNCFDRAEIARVMNAAGRRRDALPQDLQKGIDLGLVSPEVLQNFFDLEKYPLISELTHRFQGFRERLLADPKFLHRLAIEEAISITTTLLAQYEKRKENFFQEIDYVITDTVRGSVVDFFTVWLPAPTLSFLSYADEMNAPDNVGSLMGLLGSIPDNAFQKNPAGTNWNLNHRVASVVFGGLKLASVGFISSLGAVASSNSLYAIRKYLNPEVVTEQRIMRSPILKTAVVYACFLGVSANLRYQIIAGIVEHRISEQFSSQTFLVNMLSFVARTINSYWGTQQWIDLARFTGLQVRKTELPTSDSPNHAAILCNETEEASIDEIKNE 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00248 751 Gene3D - 158 421 - -
Cca01g00248 751 Coils Coil 194 214 - -
Cca01g00248 751 Pfam Haem-binding uptake, Tiki superfamily, ChaN 163 382 IPR007314 -
Cca01g00248 751 SUPERFAMILY EreA/ChaN-like 162 418 - -
Cca01g00248 751 Pfam Protein RETICULATA-related 489 673 IPR021825 -
Cca01g00248 751 MobiDBLite consensus disorder prediction 73 90 - -
Cca01g00248 751 MobiDBLite consensus disorder prediction 72 97 - -
Cca01g00248 751 PANTHER PROTEIN RETICULATA-RELATED 5, CHLOROPLASTIC 52 751 - -
Cca01g00248 751 PANTHER PROTEIN RETICULATA-RELATED 2, CHLOROPLASTIC-RELATED 52 751 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00248 Cca-Chr1 2567152 2573371 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00248 - - gmx:100810366 1254.2