Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00232 ATGGAAGCCAAAGCAGATTTTACCCAAGATGGCACCGTTGATTTCCGTGGCCAGCCAGCACTTTCCTCCAAAACAGGCAAATGGAAGGCTTGCGCTTTTCTTGTTGGGTATGAAGCATTTGAAAGGATGGCCTTCTATGGAGTGGCTTCGAACTTGGTGAATTACCTGACAAGCCAACTACATGAAGATACGGTTTCATCAGTGAGGAATGTTAATAACTGGTCAGGATCTGTGTGGATAACGCCAATTCTTGGGGCTTACATAGCAGATTCTTACTTGGGTCGCTTCTGGACTTTCACTCTCTCTTCTCTCATTTATGTCTTGGGGATGACTCTTCTCACTATAGCGGTGTCACTCAAGAGCTTGAAGCCAACATGCAGCAATGGCATATGCAACAAGGCCTCAACCTCACAAATTGCATTTTTTTACACAGCCCTTTACACTATGGCAATTGGAGCAGGAGGAACAAAACCCAATATCTCAACCTTTGGTGCTGACCAATTTGATGACTTCAATCCCAATGAGAAAGAGATAAAAGCTTCCTTCTTCAATTGGTGGATGTTTACCTCATTCTTGGGTGCTTTGATTGCCACTTTAGGGTTGGTCTACATTCAAGAGAACTTGGGGTGGGGACTAGGGTATGGGATCCCAACTGCTGGTCTCCTATTGTCTTTGGTCATATTCTATATTGGCACACCAATATATCGTCACAAAGTAAGGACAAGCAAAACTCCTGCTAGGGATATAATTCATGTACCCATTGCAGCCTTCAAGAATAGGAAACTCCAACTCCCTTGTAATCCCTTGGATCTCTATGAGCATGATCTCCAACATTATCTTAGTAGTGGAAAACGGCAAGTCAATCACACTCCAACTTTCAGGTTTTTGGACAAGGCTGCTATCAAAGGTAACAGTTCTGGTTCCACAAGAGTACCATTGACAGTAACACAAGTGGAAGGAGCTAAGCTTATCTTTGGCATGGTCCTTATATGGCTGGTGACTCTGATTCCTAGCACCATTTGGGCACAAATCAACACTCTTTTTGTGAAACAAGGCACCACTTTGAACAGAAACATTGGTGCTGATTTTAAGATTCCATCAGCCTCTCTTGGAAGCTTTGTGACACTCTCCATGCTTCTTTCAGTGCCAATGTATGACCGGTTTTTCGTGCCGTTCATGCGCCAGAAAACCGGCCACCCTAGAGGAATCACATTGCTTCAAAGGCTTGGAGTTGGATTCTCAATCCAGATCGTAGCCATAGCAATTGCTTATGCAGTAGAAGTTAGAAGAATGCATGTCATAAAAGCAAACCATGCAGCTGGTCCTAAAGACATAGTTCCTATGAGTATATTTTGGTTGATGCCTCAGTATGTTCTAATTGGGATAGCAGATGTGTTCAATGCCATTGGATTGCTAGAATTCTTCTATGATCAATCCCCTGAAGATATGCAGAGCCTTGGAACCACGTTTTTCACTAGTGGCATTGGTGTTGGGAACTTTTTGAACAGCTTTTTGGTGACAATGGTTGATAAAATAACAGGAATAGGTGACAATAAGAGCTGGATAGGGGACAACTTGAATGATTGTCACTTGGACTACTATTATGGGTTTTTGTTGGTCATGTCAAGTGTTAATTTGGTGGTTTTTCTTTGGGTTTCAAGTAGATATATTTATAAGAGGGAATCAATAAGGATCAAAGAGGGGCTTTGTGTCCAAATGGAAGGAAACCCAACTTTGGACGCCTCTCTCAGTTTACAAGTGTGA 1764 0.4257 MEAKADFTQDGTVDFRGQPALSSKTGKWKACAFLVGYEAFERMAFYGVASNLVNYLTSQLHEDTVSSVRNVNNWSGSVWITPILGAYIADSYLGRFWTFTLSSLIYVLGMTLLTIAVSLKSLKPTCSNGICNKASTSQIAFFYTALYTMAIGAGGTKPNISTFGADQFDDFNPNEKEIKASFFNWWMFTSFLGALIATLGLVYIQENLGWGLGYGIPTAGLLLSLVIFYIGTPIYRHKVRTSKTPARDIIHVPIAAFKNRKLQLPCNPLDLYEHDLQHYLSSGKRQVNHTPTFRFLDKAAIKGNSSGSTRVPLTVTQVEGAKLIFGMVLIWLVTLIPSTIWAQINTLFVKQGTTLNRNIGADFKIPSASLGSFVTLSMLLSVPMYDRFFVPFMRQKTGHPRGITLLQRLGVGFSIQIVAIAIAYAVEVRRMHVIKANHAAGPKDIVPMSIFWLMPQYVLIGIADVFNAIGLLEFFYDQSPEDMQSLGTTFFTSGIGVGNFLNSFLVTMVDKITGIGDNKSWIGDNLNDCHLDYYYGFLLVMSSVNLVVFLWVSSRYIYKRESIRIKEGLCVQMEGNPTLDASLSLQV 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00232 587 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 12 566 IPR000109 GO:0016020|GO:0022857|GO:0055085
Cca01g00232 587 Pfam POT family 96 522 IPR000109 GO:0016020|GO:0022857|GO:0055085
Cca01g00232 587 Gene3D MFS general substrate transporter like domains 1 565 IPR036259 -
Cca01g00232 587 CDD MFS_NPF5 28 558 IPR044739 GO:0042937|GO:0042938|GO:0071916
Cca01g00232 587 PANTHER PROTEIN NRT1/ PTR FAMILY 5.1 12 566 - -
Cca01g00232 587 SUPERFAMILY MFS general substrate transporter 22 553 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00232 Cca-Chr1 2407481 2413238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00232 1 585 Organic Solute Cotransporters AT2G40460 73.254 0.0 879
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00232 - - gmx:100815188 1104.74